Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC13.53□□□□□ -0.24
FOXA3P55318 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC13.53□□□□□ -0.24
FOXA3P55318 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA3P55318 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA3P55318 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA3P55318 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA3P55318 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
FOXA3P55318 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.24
FOXA3P55318 AL391005.1-201ENST00000623953 2435 ntBASIC13.52□□□□□ -0.24
FOXA3P55318 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
FOXA3P55318 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA3P55318 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA3P55318 CES3-203ENST00000543856 3178 ntTSL 2 BASIC13.52□□□□□ -0.24
FOXA3P55318 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.52□□□□□ -0.24
FOXA3P55318 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.52□□□□□ -0.25
FOXA3P55318 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
FOXA3P55318 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA3P55318 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA3P55318 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA3P55318 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC13.52□□□□□ -0.25
FOXA3P55318 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 REXO2-208ENST00000539754 791 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA3P55318 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC13.52□□□□□ -0.25
FOXA3P55318 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC13.52□□□□□ -0.25
FOXA3P55318 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA3P55318 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
FOXA3P55318 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 AL109659.2-201ENST00000606809 1674 ntBASIC13.52□□□□□ -0.25
FOXA3P55318 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.52□□□□□ -0.25
FOXA3P55318 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
FOXA3P55318 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
FOXA3P55318 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA3P55318 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
FOXA3P55318 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
FOXA3P55318 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
FOXA3P55318 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA3P55318 BOC-212ENST00000485230 2173 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA3P55318 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA3P55318 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC13.51□□□□□ -0.25
FOXA3P55318 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
FOXA3P55318 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC13.51□□□□□ -0.25
FOXA3P55318 DUSP5P2-201ENST00000426873 1033 ntBASIC13.51□□□□□ -0.25
FOXA3P55318 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA3P55318 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 Z85996.1-201ENST00000494644 937 ntBASIC13.51□□□□□ -0.25
FOXA3P55318 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
FOXA3P55318 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC13.51□□□□□ -0.25
FOXA3P55318 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA3P55318 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA3P55318 HLA-B-256ENST00000639848 1089 ntBASIC13.51□□□□□ -0.25
FOXA3P55318 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
FOXA3P55318 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA3P55318 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA3P55318 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
FOXA3P55318 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
FOXA3P55318 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA3P55318 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC13.51□□□□□ -0.25
FOXA3P55318 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA3P55318 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 AC133963.1-201ENST00000504166 1679 ntBASIC13.5□□□□□ -0.25
FOXA3P55318 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA3P55318 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
FOXA3P55318 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA3P55318 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms