Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 PXK-206ENST00000463280 2825 ntTSL 2 BASIC14.7□□□□□ -0.06
CDX1P47902 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
CDX1P47902 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CDX1P47902 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC14.69□□□□□ -0.06
CDX1P47902 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.69□□□□□ -0.06
CDX1P47902 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CDX1P47902 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.69□□□□□ -0.06
CDX1P47902 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 BUB3-202ENST00000368859 667 ntTSL 3 BASIC14.69□□□□□ -0.06
CDX1P47902 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC14.69□□□□□ -0.06
CDX1P47902 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC14.69□□□□□ -0.06
CDX1P47902 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC14.69□□□□□ -0.06
CDX1P47902 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
CDX1P47902 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC14.69□□□□□ -0.06
CDX1P47902 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.69□□□□□ -0.06
CDX1P47902 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CDX1P47902 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CDX1P47902 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
CDX1P47902 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CDX1P47902 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.69□□□□□ -0.06
CDX1P47902 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CDX1P47902 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC14.68□□□□□ -0.06
CDX1P47902 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.68□□□□□ -0.06
CDX1P47902 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14.68□□□□□ -0.06
CDX1P47902 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CDX1P47902 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
CDX1P47902 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.68□□□□□ -0.06
CDX1P47902 FLJ38576-201ENST00000623820 2459 ntBASIC14.68□□□□□ -0.06
CDX1P47902 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.68□□□□□ -0.06
CDX1P47902 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC14.68□□□□□ -0.06
CDX1P47902 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 AC104076.2-201ENST00000448912 469 ntBASIC14.68□□□□□ -0.06
CDX1P47902 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC14.68□□□□□ -0.06
CDX1P47902 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.68□□□□□ -0.06
CDX1P47902 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC14.68□□□□□ -0.06
CDX1P47902 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC14.68□□□□□ -0.06
CDX1P47902 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC14.68□□□□□ -0.06
CDX1P47902 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC14.68□□□□□ -0.06
CDX1P47902 AC141257.4-201ENST00000634557 245 ntBASIC14.68□□□□□ -0.06
CDX1P47902 AC136944.6-201ENST00000634818 245 ntBASIC14.68□□□□□ -0.06
CDX1P47902 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CDX1P47902 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CDX1P47902 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.68□□□□□ -0.06
CDX1P47902 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC14.68□□□□□ -0.06
CDX1P47902 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14.68□□□□□ -0.06
CDX1P47902 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CDX1P47902 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CDX1P47902 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CDX1P47902 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
CDX1P47902 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.67□□□□□ -0.06
CDX1P47902 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.67□□□□□ -0.06
CDX1P47902 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC14.67□□□□□ -0.06
CDX1P47902 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CDX1P47902 PCDH8P1-201ENST00000428983 2773 ntBASIC14.67□□□□□ -0.06
CDX1P47902 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms