Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 PCDHA14-201ENST00000506751 2298 ntBASIC17.19■□□□□ 0.34
MSX2P35548 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.19■□□□□ 0.34
MSX2P35548 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSX2P35548 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.19■□□□□ 0.34
MSX2P35548 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.19■□□□□ 0.34
MSX2P35548 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
MSX2P35548 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.18■□□□□ 0.34
MSX2P35548 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MSX2P35548 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
MSX2P35548 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.18■□□□□ 0.34
MSX2P35548 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.18■□□□□ 0.34
MSX2P35548 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
MSX2P35548 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.18■□□□□ 0.34
MSX2P35548 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
MSX2P35548 AL163051.1-201ENST00000569214 1512 ntBASIC17.18■□□□□ 0.34
MSX2P35548 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
MSX2P35548 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
MSX2P35548 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 NIFKP9-201ENST00000419265 221 ntBASIC17.18■□□□□ 0.34
MSX2P35548 AC069152.1-201ENST00000438030 544 ntBASIC17.18■□□□□ 0.34
MSX2P35548 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.18■□□□□ 0.34
MSX2P35548 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.18■□□□□ 0.34
MSX2P35548 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MSX2P35548 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.18■□□□□ 0.34
MSX2P35548 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.18■□□□□ 0.34
MSX2P35548 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MSX2P35548 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.18■□□□□ 0.34
MSX2P35548 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSX2P35548 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
MSX2P35548 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.17■□□□□ 0.34
MSX2P35548 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
MSX2P35548 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.17■□□□□ 0.34
MSX2P35548 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.17■□□□□ 0.34
MSX2P35548 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
MSX2P35548 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.17■□□□□ 0.34
MSX2P35548 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.17■□□□□ 0.34
MSX2P35548 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.17■□□□□ 0.34
MSX2P35548 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.17■□□□□ 0.34
MSX2P35548 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
MSX2P35548 AC133041.1-202ENST00000642053 222 ntBASIC17.17■□□□□ 0.34
MSX2P35548 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.17■□□□□ 0.34
MSX2P35548 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.17■□□□□ 0.34
MSX2P35548 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
MSX2P35548 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.17■□□□□ 0.34
MSX2P35548 AC009102.3-201ENST00000623118 1491 ntBASIC17.17■□□□□ 0.34
MSX2P35548 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.17■□□□□ 0.34
MSX2P35548 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 AGGF1P2-201ENST00000426656 2106 ntBASIC17.17■□□□□ 0.34
MSX2P35548 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSX2P35548 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.16■□□□□ 0.34
MSX2P35548 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
MSX2P35548 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.16■□□□□ 0.34
MSX2P35548 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 AL138688.1-201ENST00000624851 1594 ntBASIC17.16■□□□□ 0.34
MSX2P35548 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 AC239809.2-201ENST00000415381 517 ntBASIC17.16■□□□□ 0.34
MSX2P35548 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
MSX2P35548 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.16■□□□□ 0.34
MSX2P35548 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
MSX2P35548 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.16■□□□□ 0.34
MSX2P35548 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
MSX2P35548 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.16■□□□□ 0.34
MSX2P35548 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSX2P35548 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms