Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
RFX1P22670 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.57■□□□□ 0.72
RFX1P22670 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
RFX1P22670 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
RFX1P22670 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.57■□□□□ 0.72
RFX1P22670 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.57■□□□□ 0.72
RFX1P22670 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.57■□□□□ 0.72
RFX1P22670 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
RFX1P22670 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
RFX1P22670 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
RFX1P22670 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.57■□□□□ 0.72
RFX1P22670 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RFX1P22670 AP000997.3-201ENST00000623333 2250 ntBASIC19.56■□□□□ 0.72
RFX1P22670 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
RFX1P22670 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.56■□□□□ 0.72
RFX1P22670 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.56■□□□□ 0.72
RFX1P22670 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.56■□□□□ 0.72
RFX1P22670 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.56■□□□□ 0.72
RFX1P22670 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.56■□□□□ 0.72
RFX1P22670 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
RFX1P22670 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.56■□□□□ 0.72
RFX1P22670 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
RFX1P22670 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.56■□□□□ 0.72
RFX1P22670 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RFX1P22670 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.56■□□□□ 0.72
RFX1P22670 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX1P22670 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX1P22670 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX1P22670 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
RFX1P22670 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RFX1P22670 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX1P22670 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX1P22670 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX1P22670 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
RFX1P22670 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX1P22670 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
RFX1P22670 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.55■□□□□ 0.72
RFX1P22670 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX1P22670 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.55■□□□□ 0.72
RFX1P22670 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.55■□□□□ 0.72
RFX1P22670 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX1P22670 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX1P22670 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
RFX1P22670 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.55■□□□□ 0.72
RFX1P22670 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RFX1P22670 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
RFX1P22670 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.55■□□□□ 0.72
RFX1P22670 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.55■□□□□ 0.72
RFX1P22670 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.55■□□□□ 0.72
RFX1P22670 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.55■□□□□ 0.72
RFX1P22670 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.54■□□□□ 0.72
RFX1P22670 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.54■□□□□ 0.72
RFX1P22670 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
RFX1P22670 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX1P22670 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.54■□□□□ 0.72
RFX1P22670 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
RFX1P22670 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RFX1P22670 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX1P22670 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX1P22670 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RFX1P22670 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX1P22670 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX1P22670 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RFX1P22670 AP000347.1-202ENST00000435868 847 ntBASIC19.54■□□□□ 0.72
RFX1P22670 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RFX1P22670 KRT17P6-201ENST00000453795 1220 ntBASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms