Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
MSH3P20585 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
MSH3P20585 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 TSPY12P-201ENST00000421279 868 ntBASIC17.9■□□□□ 0.46
MSH3P20585 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.9■□□□□ 0.46
MSH3P20585 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.9■□□□□ 0.46
MSH3P20585 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.9■□□□□ 0.46
MSH3P20585 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.9■□□□□ 0.46
MSH3P20585 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.9■□□□□ 0.46
MSH3P20585 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
MSH3P20585 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.9■□□□□ 0.46
MSH3P20585 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH3P20585 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
MSH3P20585 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
MSH3P20585 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.89■□□□□ 0.45
MSH3P20585 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.89■□□□□ 0.45
MSH3P20585 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
MSH3P20585 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.89■□□□□ 0.45
MSH3P20585 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.89■□□□□ 0.45
MSH3P20585 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.89■□□□□ 0.45
MSH3P20585 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
MSH3P20585 BX276092.5-203ENST00000456199 560 ntBASIC17.89■□□□□ 0.45
MSH3P20585 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.89■□□□□ 0.45
MSH3P20585 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.89■□□□□ 0.45
MSH3P20585 KRT8P26-201ENST00000534154 1276 ntBASIC17.89■□□□□ 0.45
MSH3P20585 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
MSH3P20585 AL121672.3-201ENST00000608644 468 ntBASIC17.89■□□□□ 0.45
MSH3P20585 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
MSH3P20585 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.89■□□□□ 0.45
MSH3P20585 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.89■□□□□ 0.45
MSH3P20585 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
MSH3P20585 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.89■□□□□ 0.45
MSH3P20585 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.89■□□□□ 0.45
MSH3P20585 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.89■□□□□ 0.45
MSH3P20585 PCDHB18P-201ENST00000524813 2368 ntBASIC17.89■□□□□ 0.45
MSH3P20585 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH3P20585 PKD1P1-201ENST00000458669 6805 ntBASIC17.89■□□□□ 0.45
MSH3P20585 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH3P20585 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.88■□□□□ 0.45
MSH3P20585 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH3P20585 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH3P20585 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.88■□□□□ 0.45
MSH3P20585 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH3P20585 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
MSH3P20585 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.88■□□□□ 0.45
MSH3P20585 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 SLC25A6P5-201ENST00000435663 894 ntBASIC17.88■□□□□ 0.45
MSH3P20585 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH3P20585 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
MSH3P20585 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH3P20585 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH3P20585 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
MSH3P20585 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 AC068880.1-201ENST00000507289 2297 ntBASIC17.88■□□□□ 0.45
MSH3P20585 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.88■□□□□ 0.45
MSH3P20585 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 LINC00167-201ENST00000530583 1419 ntBASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms