Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGA1P17096 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HMGA1P17096 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGA1P17096 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.57■□□□□ 0.56
HMGA1P17096 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
HMGA1P17096 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGA1P17096 AC079776.2-201ENST00000641154 1609 ntBASIC18.57■□□□□ 0.56
HMGA1P17096 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.57■□□□□ 0.56
HMGA1P17096 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
HMGA1P17096 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.57■□□□□ 0.56
HMGA1P17096 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HMGA1P17096 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.57■□□□□ 0.56
HMGA1P17096 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HMGA1P17096 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.57■□□□□ 0.56
HMGA1P17096 AC012640.2-201ENST00000561606 901 ntBASIC18.57■□□□□ 0.56
HMGA1P17096 MTDHP4-201ENST00000600287 670 ntBASIC18.57■□□□□ 0.56
HMGA1P17096 AC073592.4-201ENST00000623827 446 ntBASIC18.57■□□□□ 0.56
HMGA1P17096 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGA1P17096 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGA1P17096 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGA1P17096 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.57■□□□□ 0.56
HMGA1P17096 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGA1P17096 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGA1P17096 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGA1P17096 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
HMGA1P17096 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGA1P17096 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.57■□□□□ 0.56
HMGA1P17096 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.56■□□□□ 0.56
HMGA1P17096 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HMGA1P17096 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 RPS2P28-201ENST00000314255 741 ntBASIC18.56■□□□□ 0.56
HMGA1P17096 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 AC103564.2-201ENST00000432853 1299 ntBASIC18.56■□□□□ 0.56
HMGA1P17096 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.56■□□□□ 0.56
HMGA1P17096 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGA1P17096 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGA1P17096 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.56■□□□□ 0.56
HMGA1P17096 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.56■□□□□ 0.56
HMGA1P17096 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
HMGA1P17096 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGA1P17096 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
HMGA1P17096 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGA1P17096 REXO1L9P-201ENST00000604264 2108 ntBASIC18.55■□□□□ 0.56
HMGA1P17096 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGA1P17096 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGA1P17096 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGA1P17096 OR7E14P-202ENST00000530490 1290 ntBASIC18.55■□□□□ 0.56
HMGA1P17096 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.55■□□□□ 0.56
HMGA1P17096 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGA1P17096 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.55■□□□□ 0.56
HMGA1P17096 AC106730.1-201ENST00000566722 1090 ntBASIC18.55■□□□□ 0.56
HMGA1P17096 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.55■□□□□ 0.56
HMGA1P17096 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.55■□□□□ 0.56
HMGA1P17096 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 SIRPAP1-201ENST00000448467 1770 ntBASIC18.55■□□□□ 0.56
HMGA1P17096 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGA1P17096 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGA1P17096 AC090164.3-201ENST00000610780 2143 ntBASIC18.55■□□□□ 0.56
HMGA1P17096 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGA1P17096 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGA1P17096 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.54■□□□□ 0.56
HMGA1P17096 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HMGA1P17096 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.54■□□□□ 0.56
HMGA1P17096 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms