Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
CXCL1P09341 LYSMD4-203ENST00000378904 2122 ntBASIC13.96□□□□□ -0.17
CXCL1P09341 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
CXCL1P09341 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC13.96□□□□□ -0.17
CXCL1P09341 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
CXCL1P09341 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 ME3-201ENST00000323418 1068 ntTSL 5 BASIC13.96□□□□□ -0.17
CXCL1P09341 MFF-205ENST00000354503 1085 ntTSL 2 BASIC13.96□□□□□ -0.17
CXCL1P09341 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC13.96□□□□□ -0.17
CXCL1P09341 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC13.96□□□□□ -0.17
CXCL1P09341 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC13.96□□□□□ -0.17
CXCL1P09341 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC13.96□□□□□ -0.17
CXCL1P09341 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC13.96□□□□□ -0.17
CXCL1P09341 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CXCL1P09341 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
CXCL1P09341 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CXCL1P09341 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC13.96□□□□□ -0.18
CXCL1P09341 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
CXCL1P09341 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CXCL1P09341 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CXCL1P09341 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CXCL1P09341 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
CXCL1P09341 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC13.96□□□□□ -0.18
CXCL1P09341 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CXCL1P09341 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CXCL1P09341 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CXCL1P09341 AL662844.4-201ENST00000606367 2838 ntBASIC13.96□□□□□ -0.18
CXCL1P09341 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CXCL1P09341 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 C1R-202ENST00000536053 2347 ntTSL 2 BASIC13.95□□□□□ -0.18
CXCL1P09341 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC13.95□□□□□ -0.18
CXCL1P09341 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
CXCL1P09341 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC13.95□□□□□ -0.18
CXCL1P09341 NME6-213ENST00000451657 871 ntTSL 2 BASIC13.95□□□□□ -0.18
CXCL1P09341 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC13.95□□□□□ -0.18
CXCL1P09341 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC13.95□□□□□ -0.18
CXCL1P09341 MAZ-216ENST00000616501 991 ntTSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC13.95□□□□□ -0.18
CXCL1P09341 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC13.95□□□□□ -0.18
CXCL1P09341 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CXCL1P09341 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
CXCL1P09341 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.95□□□□□ -0.18
CXCL1P09341 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC13.95□□□□□ -0.18
CXCL1P09341 OR6D1P-203ENST00000641209 4860 ntBASIC13.95□□□□□ -0.18
CXCL1P09341 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
CXCL1P09341 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.94□□□□□ -0.18
CXCL1P09341 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
CXCL1P09341 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 AC006449.5-201ENST00000610658 2098 ntBASIC13.94□□□□□ -0.18
CXCL1P09341 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC13.94□□□□□ -0.18
CXCL1P09341 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.94□□□□□ -0.18
CXCL1P09341 TREX2-204ENST00000370212 861 ntTSL 5 BASIC13.94□□□□□ -0.18
CXCL1P09341 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
CXCL1P09341 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
CXCL1P09341 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC13.94□□□□□ -0.18
CXCL1P09341 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC13.94□□□□□ -0.18
CXCL1P09341 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC13.94□□□□□ -0.18
CXCL1P09341 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC13.94□□□□□ -0.18
CXCL1P09341 AC112777.1-201ENST00000540175 1423 ntBASIC13.94□□□□□ -0.18
CXCL1P09341 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC13.94□□□□□ -0.18
CXCL1P09341 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC13.94□□□□□ -0.18
CXCL1P09341 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.94□□□□□ -0.18
CXCL1P09341 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
CXCL1P09341 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms