Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SIRPAP1-201ENST00000448467 1770 ntBASIC23.65■■□□□ 1.38
COL3A1P02461 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL3A1P02461 KRT18P67-201ENST00000432816 1264 ntBASIC23.65■■□□□ 1.38
COL3A1P02461 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC23.65■■□□□ 1.38
COL3A1P02461 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC23.65■■□□□ 1.38
COL3A1P02461 TMED1-207ENST00000591695 809 ntTSL 5 BASIC23.65■■□□□ 1.38
COL3A1P02461 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC23.65■■□□□ 1.38
COL3A1P02461 AC025062.2-201ENST00000605477 670 ntBASIC23.65■■□□□ 1.38
COL3A1P02461 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL3A1P02461 AC079776.2-201ENST00000641154 1609 ntBASIC23.65■■□□□ 1.38
COL3A1P02461 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.65■■□□□ 1.38
COL3A1P02461 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
COL3A1P02461 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL3A1P02461 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL3A1P02461 PAN3-AS1-201ENST00000563843 1351 ntBASIC23.65■■□□□ 1.38
COL3A1P02461 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC23.65■■□□□ 1.38
COL3A1P02461 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
COL3A1P02461 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC23.64■■□□□ 1.38
COL3A1P02461 SIGLEC16-201ENST00000599858 1437 ntBASIC23.64■■□□□ 1.38
COL3A1P02461 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC23.64■■□□□ 1.38
COL3A1P02461 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC23.64■■□□□ 1.38
COL3A1P02461 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.38
COL3A1P02461 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
COL3A1P02461 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
COL3A1P02461 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC23.64■■□□□ 1.38
COL3A1P02461 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC23.64■■□□□ 1.38
COL3A1P02461 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC23.64■■□□□ 1.38
COL3A1P02461 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
COL3A1P02461 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
COL3A1P02461 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC23.64■■□□□ 1.37
COL3A1P02461 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC23.64■■□□□ 1.37
COL3A1P02461 HLA-A-201ENST00000376802 1334 ntBASIC23.64■■□□□ 1.37
COL3A1P02461 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL3A1P02461 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL3A1P02461 NEFHP1-201ENST00000412845 2629 ntBASIC23.64■■□□□ 1.37
COL3A1P02461 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL3A1P02461 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL3A1P02461 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC23.64■■□□□ 1.37
COL3A1P02461 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL3A1P02461 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC23.63■■□□□ 1.37
COL3A1P02461 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL3A1P02461 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC23.63■■□□□ 1.37
COL3A1P02461 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL3A1P02461 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC23.63■■□□□ 1.37
COL3A1P02461 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC23.63■■□□□ 1.37
COL3A1P02461 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL3A1P02461 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC23.63■■□□□ 1.37
COL3A1P02461 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC23.63■■□□□ 1.37
COL3A1P02461 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
COL3A1P02461 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL3A1P02461 AC132938.5-201ENST00000624980 1813 ntBASIC23.63■■□□□ 1.37
COL3A1P02461 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
COL3A1P02461 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL3A1P02461 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL3A1P02461 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
COL3A1P02461 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC23.63■■□□□ 1.37
COL3A1P02461 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL3A1P02461 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC23.63■■□□□ 1.37
COL3A1P02461 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL3A1P02461 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC23.63■■□□□ 1.37
COL3A1P02461 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC23.62■■□□□ 1.37
COL3A1P02461 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
COL3A1P02461 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC23.62■■□□□ 1.37
COL3A1P02461 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC23.62■■□□□ 1.37
COL3A1P02461 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC23.62■■□□□ 1.37
COL3A1P02461 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC23.62■■□□□ 1.37
COL3A1P02461 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 BX276092.7-203ENST00000637198 1536 ntBASIC23.62■■□□□ 1.37
COL3A1P02461 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC23.62■■□□□ 1.37
COL3A1P02461 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC23.62■■□□□ 1.37
COL3A1P02461 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC23.62■■□□□ 1.37
COL3A1P02461 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 HNRNPDP1-201ENST00000439535 754 ntBASIC23.62■■□□□ 1.37
COL3A1P02461 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC23.62■■□□□ 1.37
COL3A1P02461 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
COL3A1P02461 MTDHP3-201ENST00000594186 672 ntBASIC23.62■■□□□ 1.37
COL3A1P02461 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC23.62■■□□□ 1.37
COL3A1P02461 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL3A1P02461 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL3A1P02461 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL3A1P02461 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC23.61■■□□□ 1.37
COL3A1P02461 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
COL3A1P02461 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL3A1P02461 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL3A1P02461 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL3A1P02461 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL3A1P02461 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC23.61■■□□□ 1.37
COL3A1P02461 SOD2-201ENST00000337404 991 ntTSL 2 BASIC23.61■■□□□ 1.37
COL3A1P02461 SPDYE21P-201ENST00000413323 827 ntBASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms