Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL2A1P02458 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL2A1P02458 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.86■□□□□ 0.93
COL2A1P02458 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL2A1P02458 AC004817.3-201ENST00000602957 2129 ntBASIC20.85■□□□□ 0.93
COL2A1P02458 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL2A1P02458 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
COL2A1P02458 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL2A1P02458 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
COL2A1P02458 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.85■□□□□ 0.93
COL2A1P02458 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL2A1P02458 MIR940-201ENST00000401276 94 ntBASIC20.85■□□□□ 0.93
COL2A1P02458 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.85■□□□□ 0.93
COL2A1P02458 HMGN1P19-201ENST00000436976 333 ntBASIC20.85■□□□□ 0.93
COL2A1P02458 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.85■□□□□ 0.93
COL2A1P02458 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.85■□□□□ 0.93
COL2A1P02458 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.85■□□□□ 0.93
COL2A1P02458 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.85■□□□□ 0.93
COL2A1P02458 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.85■□□□□ 0.93
COL2A1P02458 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.85■□□□□ 0.93
COL2A1P02458 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL2A1P02458 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
COL2A1P02458 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COL2A1P02458 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL2A1P02458 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL2A1P02458 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.84■□□□□ 0.93
COL2A1P02458 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
COL2A1P02458 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
COL2A1P02458 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
COL2A1P02458 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.84■□□□□ 0.93
COL2A1P02458 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.84■□□□□ 0.93
COL2A1P02458 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.84■□□□□ 0.93
COL2A1P02458 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.84■□□□□ 0.93
COL2A1P02458 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.84■□□□□ 0.93
COL2A1P02458 AL139424.1-201ENST00000607572 797 ntBASIC20.84■□□□□ 0.93
COL2A1P02458 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.84■□□□□ 0.93
COL2A1P02458 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.84■□□□□ 0.93
COL2A1P02458 AL138781.2-201ENST00000617896 1843 ntBASIC20.84■□□□□ 0.93
COL2A1P02458 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.84■□□□□ 0.93
COL2A1P02458 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.84■□□□□ 0.93
COL2A1P02458 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL2A1P02458 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL2A1P02458 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL2A1P02458 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL2A1P02458 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.83■□□□□ 0.93
COL2A1P02458 YBX2P1-201ENST00000394192 760 ntBASIC20.83■□□□□ 0.93
COL2A1P02458 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.83■□□□□ 0.93
COL2A1P02458 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL2A1P02458 GPX1P2-201ENST00000429271 606 ntBASIC20.83■□□□□ 0.93
COL2A1P02458 AC007967.2-201ENST00000432613 625 ntBASIC20.83■□□□□ 0.93
COL2A1P02458 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
COL2A1P02458 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.83■□□□□ 0.93
COL2A1P02458 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.83■□□□□ 0.93
COL2A1P02458 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.83■□□□□ 0.93
COL2A1P02458 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.83■□□□□ 0.93
COL2A1P02458 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.83■□□□□ 0.93
COL2A1P02458 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.83■□□□□ 0.93
COL2A1P02458 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.92
COL2A1P02458 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
COL2A1P02458 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL2A1P02458 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
COL2A1P02458 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL2A1P02458 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL2A1P02458 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.83■□□□□ 0.92
COL2A1P02458 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
COL2A1P02458 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.82■□□□□ 0.92
COL2A1P02458 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.82■□□□□ 0.92
COL2A1P02458 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.82■□□□□ 0.92
COL2A1P02458 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.82■□□□□ 0.92
COL2A1P02458 AC005104.2-201ENST00000427818 678 ntBASIC20.82■□□□□ 0.92
COL2A1P02458 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.82■□□□□ 0.92
COL2A1P02458 AL805961.1-202ENST00000641562 540 ntBASIC20.82■□□□□ 0.92
COL2A1P02458 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.82■□□□□ 0.92
COL2A1P02458 AC009949.1-201ENST00000623048 1830 ntBASIC20.82■□□□□ 0.92
COL2A1P02458 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.82■□□□□ 0.92
COL2A1P02458 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL2A1P02458 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms