Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.41■□□□□ 0.38
CLDN9O95484 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CLDN9O95484 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.4■□□□□ 0.38
CLDN9O95484 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.4■□□□□ 0.38
CLDN9O95484 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.4■□□□□ 0.38
CLDN9O95484 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.4■□□□□ 0.38
CLDN9O95484 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.4■□□□□ 0.38
CLDN9O95484 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CLDN9O95484 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.4■□□□□ 0.38
CLDN9O95484 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.4■□□□□ 0.38
CLDN9O95484 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 AL136038.4-201ENST00000603606 1261 ntBASIC17.4■□□□□ 0.38
CLDN9O95484 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 AL391807.1-203ENST00000604392 2365 ntBASIC17.4■□□□□ 0.38
CLDN9O95484 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.4■□□□□ 0.38
CLDN9O95484 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
CLDN9O95484 AC100803.2-201ENST00000562459 1963 ntBASIC17.4■□□□□ 0.38
CLDN9O95484 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.4■□□□□ 0.38
CLDN9O95484 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.4■□□□□ 0.38
CLDN9O95484 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLDN9O95484 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CLDN9O95484 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.39■□□□□ 0.37
CLDN9O95484 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CLDN9O95484 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.39■□□□□ 0.37
CLDN9O95484 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.39■□□□□ 0.37
CLDN9O95484 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.39■□□□□ 0.37
CLDN9O95484 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
CLDN9O95484 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 TERF1P1-201ENST00000311003 1181 ntBASIC17.39■□□□□ 0.37
CLDN9O95484 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CLDN9O95484 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.39■□□□□ 0.37
CLDN9O95484 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.39■□□□□ 0.37
CLDN9O95484 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.39■□□□□ 0.37
CLDN9O95484 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 AC011558.1-201ENST00000623459 338 ntBASIC17.39■□□□□ 0.37
CLDN9O95484 AC079602.3-201ENST00000623931 403 ntBASIC17.39■□□□□ 0.37
CLDN9O95484 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.39■□□□□ 0.37
CLDN9O95484 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CLDN9O95484 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLDN9O95484 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.39■□□□□ 0.37
CLDN9O95484 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.39■□□□□ 0.37
CLDN9O95484 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLDN9O95484 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLDN9O95484 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLDN9O95484 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.38■□□□□ 0.37
CLDN9O95484 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.38■□□□□ 0.37
CLDN9O95484 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.38■□□□□ 0.37
CLDN9O95484 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CLDN9O95484 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.38■□□□□ 0.37
CLDN9O95484 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.38■□□□□ 0.37
CLDN9O95484 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.38■□□□□ 0.37
CLDN9O95484 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.38■□□□□ 0.37
CLDN9O95484 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.38■□□□□ 0.37
CLDN9O95484 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.38■□□□□ 0.37
CLDN9O95484 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.38■□□□□ 0.37
CLDN9O95484 AC139887.4-201ENST00000607877 719 ntBASIC17.38■□□□□ 0.37
CLDN9O95484 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CLDN9O95484 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLDN9O95484 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.38■□□□□ 0.37
CLDN9O95484 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLDN9O95484 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CLDN9O95484 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLDN9O95484 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.38■□□□□ 0.37
CLDN9O95484 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.37■□□□□ 0.37
CLDN9O95484 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLDN9O95484 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CLDN9O95484 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLDN9O95484 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLDN9O95484 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLDN9O95484 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.37■□□□□ 0.37
CLDN9O95484 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLDN9O95484 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLDN9O95484 STARP1-201ENST00000397973 869 ntBASIC17.37■□□□□ 0.37
CLDN9O95484 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CLDN9O95484 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLDN9O95484 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.37■□□□□ 0.37
CLDN9O95484 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms