Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
SHOX2O60902 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
SHOX2O60902 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.99■□□□□ 0.47
SHOX2O60902 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.99■□□□□ 0.47
SHOX2O60902 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.99■□□□□ 0.47
SHOX2O60902 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.99■□□□□ 0.47
SHOX2O60902 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.99■□□□□ 0.47
SHOX2O60902 Z85996.1-201ENST00000494644 937 ntBASIC17.99■□□□□ 0.47
SHOX2O60902 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.99■□□□□ 0.47
SHOX2O60902 PRSS44-201ENST00000515154 1146 ntBASIC17.99■□□□□ 0.47
SHOX2O60902 DUTP2-201ENST00000519164 463 ntBASIC17.99■□□□□ 0.47
SHOX2O60902 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.99■□□□□ 0.47
SHOX2O60902 AC105036.2-201ENST00000569468 176 ntBASIC17.99■□□□□ 0.47
SHOX2O60902 MIR5787-201ENST00000611784 55 ntBASIC17.99■□□□□ 0.47
SHOX2O60902 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SHOX2O60902 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SHOX2O60902 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHOX2O60902 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.98■□□□□ 0.47
SHOX2O60902 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 AC104640.1-201ENST00000562617 2109 ntBASIC17.98■□□□□ 0.47
SHOX2O60902 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.98■□□□□ 0.47
SHOX2O60902 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.98■□□□□ 0.47
SHOX2O60902 AC099343.3-201ENST00000605834 2503 ntBASIC17.98■□□□□ 0.47
SHOX2O60902 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.98■□□□□ 0.47
SHOX2O60902 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.98■□□□□ 0.47
SHOX2O60902 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.98■□□□□ 0.47
SHOX2O60902 AC080038.1-201ENST00000611274 1154 ntBASIC17.98■□□□□ 0.47
SHOX2O60902 AC073111.5-205ENST00000641717 521 ntBASIC17.98■□□□□ 0.47
SHOX2O60902 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.98■□□□□ 0.47
SHOX2O60902 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.98■□□□□ 0.47
SHOX2O60902 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.98■□□□□ 0.47
SHOX2O60902 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHOX2O60902 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
SHOX2O60902 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.97■□□□□ 0.47
SHOX2O60902 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.97■□□□□ 0.47
SHOX2O60902 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC17.97■□□□□ 0.47
SHOX2O60902 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.97■□□□□ 0.47
SHOX2O60902 AC133552.2-202ENST00000575694 574 ntBASIC17.97■□□□□ 0.47
SHOX2O60902 AL121829.2-201ENST00000620908 328 ntBASIC17.97■□□□□ 0.47
SHOX2O60902 LINC01451-201ENST00000623792 534 ntBASIC17.97■□□□□ 0.47
SHOX2O60902 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.97■□□□□ 0.47
SHOX2O60902 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.97■□□□□ 0.47
SHOX2O60902 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SHOX2O60902 AC068418.2-201ENST00000577309 3703 ntBASIC17.97■□□□□ 0.47
SHOX2O60902 AC078925.2-201ENST00000624013 1973 ntBASIC17.97■□□□□ 0.47
SHOX2O60902 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.97■□□□□ 0.47
SHOX2O60902 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
SHOX2O60902 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHOX2O60902 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SHOX2O60902 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHOX2O60902 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms