Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
PROM1O43490 AC087388.1-201ENST00000571370 1112 ntBASIC17.08■□□□□ 0.32
PROM1O43490 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.08■□□□□ 0.32
PROM1O43490 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.08■□□□□ 0.32
PROM1O43490 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.08■□□□□ 0.32
PROM1O43490 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PROM1O43490 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.08■□□□□ 0.32
PROM1O43490 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.08■□□□□ 0.32
PROM1O43490 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PROM1O43490 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
PROM1O43490 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.07■□□□□ 0.32
PROM1O43490 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.07■□□□□ 0.32
PROM1O43490 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.07■□□□□ 0.32
PROM1O43490 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PROM1O43490 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
PROM1O43490 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.07■□□□□ 0.32
PROM1O43490 AL031133.1-201ENST00000406807 723 ntBASIC17.07■□□□□ 0.32
PROM1O43490 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.07■□□□□ 0.32
PROM1O43490 SLC25A6P5-201ENST00000435663 894 ntBASIC17.07■□□□□ 0.32
PROM1O43490 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.07■□□□□ 0.32
PROM1O43490 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.07■□□□□ 0.32
PROM1O43490 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.07■□□□□ 0.32
PROM1O43490 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.07■□□□□ 0.32
PROM1O43490 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.07■□□□□ 0.32
PROM1O43490 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.07■□□□□ 0.32
PROM1O43490 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.07■□□□□ 0.32
PROM1O43490 AC004263.2-201ENST00000617183 678 ntBASIC17.07■□□□□ 0.32
PROM1O43490 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.07■□□□□ 0.32
PROM1O43490 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.07■□□□□ 0.32
PROM1O43490 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.07■□□□□ 0.32
PROM1O43490 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.07■□□□□ 0.32
PROM1O43490 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
PROM1O43490 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PROM1O43490 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PROM1O43490 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PROM1O43490 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PROM1O43490 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
PROM1O43490 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.06■□□□□ 0.32
PROM1O43490 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
PROM1O43490 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.06■□□□□ 0.32
PROM1O43490 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
PROM1O43490 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.06■□□□□ 0.32
PROM1O43490 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.06■□□□□ 0.32
PROM1O43490 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.06■□□□□ 0.32
PROM1O43490 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.06■□□□□ 0.32
PROM1O43490 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.06■□□□□ 0.32
PROM1O43490 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PROM1O43490 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.06■□□□□ 0.32
PROM1O43490 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.06■□□□□ 0.32
PROM1O43490 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.06■□□□□ 0.32
PROM1O43490 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.06■□□□□ 0.32
PROM1O43490 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
PROM1O43490 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.06■□□□□ 0.32
PROM1O43490 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PROM1O43490 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.06■□□□□ 0.32
PROM1O43490 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PROM1O43490 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PROM1O43490 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.06■□□□□ 0.32
PROM1O43490 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.06■□□□□ 0.32
PROM1O43490 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PROM1O43490 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms