Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
HMGB3O15347 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
HMGB3O15347 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC14.49□□□□□ -0.09
HMGB3O15347 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGB3O15347 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGB3O15347 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC14.49□□□□□ -0.09
HMGB3O15347 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC14.49□□□□□ -0.09
HMGB3O15347 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC14.49□□□□□ -0.09
HMGB3O15347 AL160286.2-201ENST00000567150 934 ntBASIC14.49□□□□□ -0.09
HMGB3O15347 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGB3O15347 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGB3O15347 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
HMGB3O15347 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
HMGB3O15347 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
HMGB3O15347 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.49□□□□□ -0.09
HMGB3O15347 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
HMGB3O15347 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB3O15347 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGB3O15347 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 NME9-203ENST00000383180 2133 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGB3O15347 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGB3O15347 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
HMGB3O15347 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
HMGB3O15347 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
HMGB3O15347 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGB3O15347 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGB3O15347 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGB3O15347 MAX-217ENST00000557277 728 ntTSL 3 BASIC14.48□□□□□ -0.09
HMGB3O15347 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGB3O15347 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.48□□□□□ -0.09
HMGB3O15347 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
HMGB3O15347 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.48□□□□□ -0.09
HMGB3O15347 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
HMGB3O15347 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGB3O15347 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HMGB3O15347 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
HMGB3O15347 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
HMGB3O15347 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC14.48□□□□□ -0.09
HMGB3O15347 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC14.47□□□□□ -0.09
HMGB3O15347 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
HMGB3O15347 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
HMGB3O15347 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.47□□□□□ -0.09
HMGB3O15347 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
HMGB3O15347 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HMGB3O15347 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC14.47□□□□□ -0.09
HMGB3O15347 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
HMGB3O15347 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC14.47□□□□□ -0.09
HMGB3O15347 GUK1-205ENST00000366722 850 ntTSL 3 BASIC14.47□□□□□ -0.09
HMGB3O15347 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC14.47□□□□□ -0.09
HMGB3O15347 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC14.47□□□□□ -0.09
HMGB3O15347 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC14.47□□□□□ -0.09
HMGB3O15347 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC14.47□□□□□ -0.09
HMGB3O15347 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
HMGB3O15347 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
HMGB3O15347 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HMGB3O15347 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms