Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 KRT126P-201ENST00000549467 1181 ntBASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.12■□□□□ 0.81
COL4A3BPQ9Y5P4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 LINC00265-3P-201ENST00000447588 903 ntBASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 GUSBP12-201ENST00000513727 720 ntBASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 AL592071.1-201ENST00000611956 408 ntBASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 AC138028.4-201ENST00000564984 1845 ntBASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.11■□□□□ 0.81
COL4A3BPQ9Y5P4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 TOB2P1-201ENST00000469761 992 ntBASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 AC008764.6-201ENST00000595909 2069 ntBASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A3BPQ9Y5P4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms