Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 AC007967.3-201ENST00000434308 558 ntBASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 AC211476.1-201ENST00000503899 468 ntBASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 AL022326.1-202ENST00000641533 845 ntBASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 AC079776.2-201ENST00000641154 1609 ntBASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.14■□□□□ 0.17
SNRNP40Q96DI7 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 AC064836.3-201ENST00000607928 673 ntBASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 AC005593.1-201ENST00000624894 515 ntBASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.13■□□□□ 0.17
SNRNP40Q96DI7 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 PGM5P2-202ENST00000637225 1043 ntBASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 AC097374.2-201ENST00000618617 1306 ntBASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SNRNP40Q96DI7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SNRNP40Q96DI7 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms