Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ADK-206ENST00000541550 2222 ntTSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 AC004870.1-201ENST00000315132 882 ntBASIC5.57□□□□□ -1.52
SYNE1Q8NF91 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 TSPY22P-201ENST00000427496 604 ntBASIC5.57□□□□□ -1.52
SYNE1Q8NF91 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 AC139530.3-201ENST00000620344 690 ntBASIC5.57□□□□□ -1.52
SYNE1Q8NF91 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 AC098818.2-201ENST00000564925 2320 ntBASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PGAM5P1-201ENST00000518923 814 ntBASIC5.57□□□□□ -1.52
SYNE1Q8NF91 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SYNE1Q8NF91 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MRPL3P1-201ENST00000400109 1033 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AC055717.3-201ENST00000622967 595 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 EMD-201ENST00000369835 966 ntTSL 3 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 GRAMD4P1-201ENST00000435181 1110 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PTGES2-AS1-201ENST00000443493 2100 ntBASIC5.56□□□□□ -1.52
SYNE1Q8NF91 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SYNE1Q8NF91 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms