Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 AF186192.3-201ENST00000583427 947 ntBASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ZNF540Q8NDQ6 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 AC073195.1-201ENST00000607241 877 ntBASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
ZNF540Q8NDQ6 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
ZNF540Q8NDQ6 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
ZNF540Q8NDQ6 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
ZNF540Q8NDQ6 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 AC026471.5-201ENST00000615068 467 ntBASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ZNF540Q8NDQ6 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ZNF540Q8NDQ6 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms