Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 AC136632.2-201ENST00000512891 861 ntBASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 MIR3197-201ENST00000582241 73 ntBASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.37■□□□□ 0.53
SLC44A3Q8N4M1 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 RFPL4AP1-201ENST00000530883 850 ntBASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 MIR4469-201ENST00000583919 79 ntBASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.36■□□□□ 0.53
SLC44A3Q8N4M1 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 CYMP-203ENST00000474680 1263 ntBASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 AD001527.2-201ENST00000622994 785 ntBASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SLC44A3Q8N4M1 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 AC254562.1-201ENST00000417586 456 ntBASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.34■□□□□ 0.53
SLC44A3Q8N4M1 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SLC44A3Q8N4M1 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms