Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC22.05■■□□□ 1.12
USP48Q86UV5 AC132008.2-207ENST00000454517 770 ntBASIC22.05■■□□□ 1.12
USP48Q86UV5 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC22.05■■□□□ 1.12
USP48Q86UV5 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC22.05■■□□□ 1.12
USP48Q86UV5 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
USP48Q86UV5 AC008608.2-201ENST00000606089 416 ntBASIC22.05■■□□□ 1.12
USP48Q86UV5 AC055717.3-201ENST00000622967 595 ntBASIC22.05■■□□□ 1.12
USP48Q86UV5 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC22.05■■□□□ 1.12
USP48Q86UV5 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
USP48Q86UV5 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
USP48Q86UV5 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
USP48Q86UV5 PCDHB18P-201ENST00000524813 2368 ntBASIC22.05■■□□□ 1.12
USP48Q86UV5 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
USP48Q86UV5 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
USP48Q86UV5 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC22.04■■□□□ 1.12
USP48Q86UV5 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
USP48Q86UV5 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC22.04■■□□□ 1.12
USP48Q86UV5 ZNF259P1-201ENST00000407656 1365 ntBASIC22.04■■□□□ 1.12
USP48Q86UV5 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
USP48Q86UV5 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC22.04■■□□□ 1.12
USP48Q86UV5 HMGN1P19-201ENST00000436976 333 ntBASIC22.04■■□□□ 1.12
USP48Q86UV5 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC22.04■■□□□ 1.12
USP48Q86UV5 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC22.04■■□□□ 1.12
USP48Q86UV5 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC22.04■■□□□ 1.12
USP48Q86UV5 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC22.04■■□□□ 1.12
USP48Q86UV5 MIR7706-201ENST00000613747 67 ntBASIC22.04■■□□□ 1.12
USP48Q86UV5 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC22.04■■□□□ 1.12
USP48Q86UV5 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC22.04■■□□□ 1.12
USP48Q86UV5 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC22.04■■□□□ 1.12
USP48Q86UV5 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC22.04■■□□□ 1.12
USP48Q86UV5 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC22.04■■□□□ 1.12
USP48Q86UV5 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
USP48Q86UV5 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC22.03■■□□□ 1.12
USP48Q86UV5 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC22.03■■□□□ 1.12
USP48Q86UV5 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22.03■■□□□ 1.12
USP48Q86UV5 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
USP48Q86UV5 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
USP48Q86UV5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC22.03■■□□□ 1.12
USP48Q86UV5 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC22.03■■□□□ 1.12
USP48Q86UV5 AC018712.1-201ENST00000455767 687 ntBASIC22.03■■□□□ 1.12
USP48Q86UV5 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC22.03■■□□□ 1.12
USP48Q86UV5 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC22.03■■□□□ 1.12
USP48Q86UV5 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
USP48Q86UV5 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC22.03■■□□□ 1.12
USP48Q86UV5 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC22.03■■□□□ 1.12
USP48Q86UV5 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
USP48Q86UV5 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC22.02■■□□□ 1.12
USP48Q86UV5 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC22.02■■□□□ 1.12
USP48Q86UV5 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC22.02■■□□□ 1.12
USP48Q86UV5 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
USP48Q86UV5 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC22.02■■□□□ 1.12
USP48Q86UV5 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC22.02■■□□□ 1.12
USP48Q86UV5 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC22.02■■□□□ 1.12
USP48Q86UV5 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC22.02■■□□□ 1.12
USP48Q86UV5 FAM215A-202ENST00000632077 792 ntBASIC22.02■■□□□ 1.12
USP48Q86UV5 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC22.02■■□□□ 1.12
USP48Q86UV5 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC22.02■■□□□ 1.12
USP48Q86UV5 ANO7L1-203ENST00000602586 1720 ntBASIC22.02■■□□□ 1.12
USP48Q86UV5 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC22.02■■□□□ 1.12
USP48Q86UV5 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
USP48Q86UV5 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
USP48Q86UV5 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC22.02■■□□□ 1.11
USP48Q86UV5 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
USP48Q86UV5 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
USP48Q86UV5 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP48Q86UV5 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC22.01■■□□□ 1.11
USP48Q86UV5 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms