Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 KRT16P4-201ENST00000453883 522 ntBASIC21.33■■□□□ 1.01
CTR9Q6PD62 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.33■■□□□ 1.01
CTR9Q6PD62 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 AL691432.3-201ENST00000621860 400 ntBASIC21.33■■□□□ 1.01
CTR9Q6PD62 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTR9Q6PD62 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.33■■□□□ 1.01
CTR9Q6PD62 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC21.33■■□□□ 1
CTR9Q6PD62 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
CTR9Q6PD62 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1
CTR9Q6PD62 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.32■■□□□ 1
CTR9Q6PD62 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.32■■□□□ 1
CTR9Q6PD62 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CTR9Q6PD62 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
CTR9Q6PD62 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CTR9Q6PD62 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.32■■□□□ 1
CTR9Q6PD62 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 RCN1P2-201ENST00000398357 915 ntBASIC21.32■■□□□ 1
CTR9Q6PD62 TPM4P1-201ENST00000436100 807 ntBASIC21.32■■□□□ 1
CTR9Q6PD62 EMBP1-201ENST00000458200 901 ntBASIC21.32■■□□□ 1
CTR9Q6PD62 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.32■■□□□ 1
CTR9Q6PD62 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.32■■□□□ 1
CTR9Q6PD62 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.32■■□□□ 1
CTR9Q6PD62 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
CTR9Q6PD62 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CTR9Q6PD62 TP73-AS1-210ENST00000637775 1455 ntBASIC21.32■■□□□ 1
CTR9Q6PD62 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTR9Q6PD62 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.32■■□□□ 1
CTR9Q6PD62 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.31■■□□□ 1
CTR9Q6PD62 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.31■■□□□ 1
CTR9Q6PD62 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
CTR9Q6PD62 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.31■■□□□ 1
CTR9Q6PD62 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC21.31■■□□□ 1
CTR9Q6PD62 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CTR9Q6PD62 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.31■■□□□ 1
CTR9Q6PD62 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.31■■□□□ 1
CTR9Q6PD62 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.31■■□□□ 1
CTR9Q6PD62 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.31■■□□□ 1
CTR9Q6PD62 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.31■■□□□ 1
CTR9Q6PD62 AC096582.2-201ENST00000510860 516 ntBASIC21.31■■□□□ 1
CTR9Q6PD62 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21.31■■□□□ 1
CTR9Q6PD62 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC21.31■■□□□ 1
CTR9Q6PD62 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.31■■□□□ 1
CTR9Q6PD62 MIR5100-201ENST00000579544 119 ntBASIC21.31■■□□□ 1
CTR9Q6PD62 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.31■■□□□ 1
CTR9Q6PD62 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.31■■□□□ 1
CTR9Q6PD62 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.31■■□□□ 1
CTR9Q6PD62 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.31■■□□□ 1
CTR9Q6PD62 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTR9Q6PD62 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.3■■□□□ 1
CTR9Q6PD62 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.3■■□□□ 1
CTR9Q6PD62 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.3■■□□□ 1
CTR9Q6PD62 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CTR9Q6PD62 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms