Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
RC3H1Q5TC82 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
RC3H1Q5TC82 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RC3H1Q5TC82 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
RC3H1Q5TC82 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RC3H1Q5TC82 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RC3H1Q5TC82 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 IGLL3P-201ENST00000412472 434 ntBASIC22.53■■□□□ 1.2
RC3H1Q5TC82 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 SIRPAP1-201ENST00000448467 1770 ntBASIC22.53■■□□□ 1.2
RC3H1Q5TC82 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
RC3H1Q5TC82 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 CD82-202ENST00000342935 967 ntTSL 5 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 CEND1P1-201ENST00000451006 455 ntBASIC22.52■■□□□ 1.2
RC3H1Q5TC82 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 RIN3-211ENST00000557762 517 ntTSL 3 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 AL078644.1-201ENST00000609881 752 ntBASIC22.52■■□□□ 1.2
RC3H1Q5TC82 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 ORC5-208ENST00000626700 344 ntTSL 3 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
RC3H1Q5TC82 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.19
RC3H1Q5TC82 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
RC3H1Q5TC82 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC22.52■■□□□ 1.19
RC3H1Q5TC82 PKD1P6-201ENST00000343738 4769 ntBASIC22.51■■□□□ 1.19
RC3H1Q5TC82 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 SIGLEC30P-201ENST00000455569 941 ntBASIC22.51■■□□□ 1.19
RC3H1Q5TC82 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 METTL23-205ENST00000588302 925 ntTSL 5 BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 AC010654.1-201ENST00000615722 808 ntBASIC22.51■■□□□ 1.19
RC3H1Q5TC82 AL805961.1-202ENST00000641562 540 ntBASIC22.51■■□□□ 1.19
RC3H1Q5TC82 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RC3H1Q5TC82 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 AC096734.2-201ENST00000562054 433 ntBASIC22.5■■□□□ 1.19
RC3H1Q5TC82 PDPK2P-202ENST00000562415 1191 ntBASIC22.5■■□□□ 1.19
RC3H1Q5TC82 AL031432.2-201ENST00000566714 459 ntBASIC22.5■■□□□ 1.19
RC3H1Q5TC82 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 AL928711.1-201ENST00000570165 459 ntBASIC22.5■■□□□ 1.19
RC3H1Q5TC82 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
RC3H1Q5TC82 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RC3H1Q5TC82 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms