Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 MIR4785-201ENST00000585005 73 ntBASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
LRIF1Q5T3J3 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 HLA-J-201ENST00000462773 1622 ntBASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRIF1Q5T3J3 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 EGLN1P1-201ENST00000531623 762 ntBASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 MIR3917-201ENST00000580971 93 ntBASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 CROCCP2-202ENST00000412962 2773 ntBASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LRIF1Q5T3J3 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
LRIF1Q5T3J3 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LRIF1Q5T3J3 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LRIF1Q5T3J3 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LRIF1Q5T3J3 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LRIF1Q5T3J3 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LRIF1Q5T3J3 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.95■□□□□ 0.3
LRIF1Q5T3J3 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
LRIF1Q5T3J3 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
LRIF1Q5T3J3 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms