Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
FOXF1Q12946 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
FOXF1Q12946 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
FOXF1Q12946 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXF1Q12946 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
FOXF1Q12946 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXF1Q12946 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXF1Q12946 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.31■□□□□ 0.2
FOXF1Q12946 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.31■□□□□ 0.2
FOXF1Q12946 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXF1Q12946 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 AC018470.1-201ENST00000624790 3129 ntBASIC16.31■□□□□ 0.2
FOXF1Q12946 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXF1Q12946 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXF1Q12946 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXF1Q12946 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXF1Q12946 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXF1Q12946 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
FOXF1Q12946 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
FOXF1Q12946 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
FOXF1Q12946 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
FOXF1Q12946 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
FOXF1Q12946 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXF1Q12946 AL592071.1-201ENST00000611956 408 ntBASIC16.3■□□□□ 0.2
FOXF1Q12946 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXF1Q12946 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.3■□□□□ 0.2
FOXF1Q12946 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
FOXF1Q12946 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.3■□□□□ 0.2
FOXF1Q12946 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXF1Q12946 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXF1Q12946 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXF1Q12946 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXF1Q12946 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.29■□□□□ 0.2
FOXF1Q12946 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
FOXF1Q12946 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
FOXF1Q12946 AC022898.2-201ENST00000616822 1312 ntBASIC16.29■□□□□ 0.2
FOXF1Q12946 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.29■□□□□ 0.2
FOXF1Q12946 GUSBP12-201ENST00000513727 720 ntBASIC16.29■□□□□ 0.2
FOXF1Q12946 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.29■□□□□ 0.2
FOXF1Q12946 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.29■□□□□ 0.2
FOXF1Q12946 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.29■□□□□ 0.2
FOXF1Q12946 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
FOXF1Q12946 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 AC100803.2-201ENST00000562459 1963 ntBASIC16.29■□□□□ 0.2
FOXF1Q12946 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
FOXF1Q12946 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
FOXF1Q12946 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms