Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTCFP49711 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CTCFP49711 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.77■□□□□ 0.92
CTCFP49711 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.77■□□□□ 0.92
CTCFP49711 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CTCFP49711 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CTCFP49711 HNRNPFP1-201ENST00000391730 1133 ntBASIC20.77■□□□□ 0.92
CTCFP49711 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.77■□□□□ 0.92
CTCFP49711 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC20.77■□□□□ 0.92
CTCFP49711 SLBP-205ENST00000488267 987 ntTSL 2 BASIC20.77■□□□□ 0.92
CTCFP49711 SMN2-210ENST00000511812 867 ntTSL 2 BASIC20.77■□□□□ 0.92
CTCFP49711 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CTCFP49711 AC008687.5-201ENST00000593746 558 ntBASIC20.77■□□□□ 0.92
CTCFP49711 AC027307.3-201ENST00000594262 1100 ntBASIC20.77■□□□□ 0.92
CTCFP49711 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CTCFP49711 AC073592.5-201ENST00000624854 528 ntBASIC20.77■□□□□ 0.92
CTCFP49711 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CTCFP49711 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CTCFP49711 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.77■□□□□ 0.92
CTCFP49711 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.77■□□□□ 0.92
CTCFP49711 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.77■□□□□ 0.92
CTCFP49711 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.77■□□□□ 0.92
CTCFP49711 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CTCFP49711 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CTCFP49711 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
CTCFP49711 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CTCFP49711 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
CTCFP49711 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.76■□□□□ 0.91
CTCFP49711 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CTCFP49711 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.76■□□□□ 0.91
CTCFP49711 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CTCFP49711 NEK7-201ENST00000367383 586 ntTSL 2 BASIC20.76■□□□□ 0.91
CTCFP49711 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CTCFP49711 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.76■□□□□ 0.91
CTCFP49711 MTCL1P1-201ENST00000446207 792 ntBASIC20.76■□□□□ 0.91
CTCFP49711 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.76■□□□□ 0.91
CTCFP49711 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
CTCFP49711 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.76■□□□□ 0.91
CTCFP49711 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.76■□□□□ 0.91
CTCFP49711 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CTCFP49711 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CTCFP49711 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.76■□□□□ 0.91
CTCFP49711 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 AC079776.2-201ENST00000641154 1609 ntBASIC20.75■□□□□ 0.91
CTCFP49711 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CTCFP49711 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.75■□□□□ 0.91
CTCFP49711 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.75■□□□□ 0.91
CTCFP49711 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
CTCFP49711 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.75■□□□□ 0.91
CTCFP49711 AC055876.3-201ENST00000431496 288 ntBASIC20.75■□□□□ 0.91
CTCFP49711 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC20.75■□□□□ 0.91
CTCFP49711 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 AC108073.2-201ENST00000464002 357 ntBASIC20.75■□□□□ 0.91
CTCFP49711 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC20.75■□□□□ 0.91
CTCFP49711 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC20.75■□□□□ 0.91
CTCFP49711 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC20.75■□□□□ 0.91
CTCFP49711 AC138649.4-201ENST00000612222 287 ntBASIC20.75■□□□□ 0.91
CTCFP49711 AC008761.3-201ENST00000624803 892 ntBASIC20.75■□□□□ 0.91
CTCFP49711 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.75■□□□□ 0.91
CTCFP49711 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.75■□□□□ 0.91
CTCFP49711 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CTCFP49711 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.75■□□□□ 0.91
CTCFP49711 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.75■□□□□ 0.91
CTCFP49711 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CTCFP49711 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.75■□□□□ 0.91
CTCFP49711 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CTCFP49711 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CTCFP49711 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CTCFP49711 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.74■□□□□ 0.91
CTCFP49711 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.74■□□□□ 0.91
CTCFP49711 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC20.74■□□□□ 0.91
CTCFP49711 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC20.74■□□□□ 0.91
CTCFP49711 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.74■□□□□ 0.91
CTCFP49711 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC20.74■□□□□ 0.91
CTCFP49711 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC20.74■□□□□ 0.91
CTCFP49711 LINC02560-201ENST00000596379 459 ntBASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms