Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
RFX3P48380 AC011558.1-201ENST00000623459 338 ntBASIC16.95■□□□□ 0.3
RFX3P48380 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
RFX3P48380 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.95■□□□□ 0.3
RFX3P48380 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
RFX3P48380 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.95■□□□□ 0.3
RFX3P48380 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.95■□□□□ 0.3
RFX3P48380 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
RFX3P48380 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.95■□□□□ 0.3
RFX3P48380 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
RFX3P48380 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
RFX3P48380 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
RFX3P48380 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
RFX3P48380 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
RFX3P48380 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.94■□□□□ 0.3
RFX3P48380 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.94■□□□□ 0.3
RFX3P48380 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.94■□□□□ 0.3
RFX3P48380 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
RFX3P48380 AC034232.1-201ENST00000506026 1064 ntBASIC16.94■□□□□ 0.3
RFX3P48380 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
RFX3P48380 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.94■□□□□ 0.3
RFX3P48380 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.94■□□□□ 0.3
RFX3P48380 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.94■□□□□ 0.3
RFX3P48380 AL031432.5-201ENST00000641059 760 ntBASIC16.94■□□□□ 0.3
RFX3P48380 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.94■□□□□ 0.3
RFX3P48380 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 AC073508.3-201ENST00000619697 1419 ntBASIC16.94■□□□□ 0.3
RFX3P48380 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
RFX3P48380 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
RFX3P48380 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
RFX3P48380 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
RFX3P48380 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 AC093677.2-201ENST00000600169 1863 ntBASIC16.93■□□□□ 0.3
RFX3P48380 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
RFX3P48380 AK4P3-201ENST00000418260 669 ntBASIC16.93■□□□□ 0.3
RFX3P48380 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.93■□□□□ 0.3
RFX3P48380 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.93■□□□□ 0.3
RFX3P48380 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.93■□□□□ 0.3
RFX3P48380 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.93■□□□□ 0.3
RFX3P48380 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
RFX3P48380 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.93■□□□□ 0.3
RFX3P48380 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.93■□□□□ 0.3
RFX3P48380 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
RFX3P48380 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.93■□□□□ 0.3
RFX3P48380 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.93■□□□□ 0.3
RFX3P48380 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
RFX3P48380 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 AC068880.1-201ENST00000507289 2297 ntBASIC16.93■□□□□ 0.3
RFX3P48380 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RFX3P48380 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.93■□□□□ 0.3
RFX3P48380 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
RFX3P48380 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RFX3P48380 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms