Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SOX3P41225 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 AC073592.3-201ENST00000625118 1834 ntBASIC16.96■□□□□ 0.31
SOX3P41225 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 AC099343.3-201ENST00000605834 2503 ntBASIC16.96■□□□□ 0.31
SOX3P41225 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.96■□□□□ 0.31
SOX3P41225 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SOX3P41225 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.96■□□□□ 0.31
SOX3P41225 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.96■□□□□ 0.31
SOX3P41225 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.96■□□□□ 0.31
SOX3P41225 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SOX3P41225 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SOX3P41225 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
SOX3P41225 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.96■□□□□ 0.3
SOX3P41225 ESPNP-201ENST00000270691 2015 ntBASIC16.96■□□□□ 0.3
SOX3P41225 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SOX3P41225 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SOX3P41225 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.96■□□□□ 0.3
SOX3P41225 AC112777.1-201ENST00000540175 1423 ntBASIC16.96■□□□□ 0.3
SOX3P41225 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SOX3P41225 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SOX3P41225 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.95■□□□□ 0.3
SOX3P41225 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SOX3P41225 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.95■□□□□ 0.3
SOX3P41225 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.95■□□□□ 0.3
SOX3P41225 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SOX3P41225 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.95■□□□□ 0.3
SOX3P41225 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SOX3P41225 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SOX3P41225 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
SOX3P41225 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX3P41225 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX3P41225 MYLKP1-201ENST00000509077 1580 ntBASIC16.94■□□□□ 0.3
SOX3P41225 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SOX3P41225 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.94■□□□□ 0.3
SOX3P41225 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX3P41225 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SOX3P41225 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.94■□□□□ 0.3
SOX3P41225 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.94■□□□□ 0.3
SOX3P41225 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX3P41225 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.94■□□□□ 0.3
SOX3P41225 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.94■□□□□ 0.3
SOX3P41225 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 AL162741.1-201ENST00000565563 1558 ntBASIC16.94■□□□□ 0.3
SOX3P41225 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SOX3P41225 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SOX3P41225 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.93■□□□□ 0.3
SOX3P41225 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SOX3P41225 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SOX3P41225 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.93■□□□□ 0.3
SOX3P41225 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SOX3P41225 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
SOX3P41225 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.93■□□□□ 0.3
SOX3P41225 MIR662-201ENST00000384847 95 ntBASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms