Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD3P31249 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HOXD3P31249 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HOXD3P31249 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD3P31249 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 GUSBP12-201ENST00000513727 720 ntBASIC13.92□□□□□ -0.18
HOXD3P31249 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC13.92□□□□□ -0.18
HOXD3P31249 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXD3P31249 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.92□□□□□ -0.18
HOXD3P31249 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXD3P31249 Z69720.1-201ENST00000601483 472 ntBASIC13.92□□□□□ -0.18
HOXD3P31249 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC13.92□□□□□ -0.18
HOXD3P31249 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HOXD3P31249 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HOXD3P31249 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HOXD3P31249 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC13.92□□□□□ -0.18
HOXD3P31249 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
HOXD3P31249 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC13.91□□□□□ -0.18
HOXD3P31249 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 LINC00602-201ENST00000629776 2065 ntBASIC13.91□□□□□ -0.18
HOXD3P31249 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD3P31249 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC13.91□□□□□ -0.18
HOXD3P31249 TSPY12P-201ENST00000421279 868 ntBASIC13.91□□□□□ -0.18
HOXD3P31249 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD3P31249 AP002469.2-201ENST00000531724 424 ntBASIC13.91□□□□□ -0.18
HOXD3P31249 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
HOXD3P31249 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD3P31249 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC13.91□□□□□ -0.18
HOXD3P31249 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.91□□□□□ -0.18
HOXD3P31249 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD3P31249 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC13.91□□□□□ -0.18
HOXD3P31249 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
HOXD3P31249 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
HOXD3P31249 AC090164.3-201ENST00000610780 2143 ntBASIC13.91□□□□□ -0.18
HOXD3P31249 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
HOXD3P31249 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
HOXD3P31249 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC13.91□□□□□ -0.18
HOXD3P31249 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HOXD3P31249 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD3P31249 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD3P31249 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD3P31249 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD3P31249 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.9□□□□□ -0.18
HOXD3P31249 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
HOXD3P31249 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD3P31249 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC13.9□□□□□ -0.18
HOXD3P31249 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD3P31249 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
HOXD3P31249 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HOXD3P31249 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HOXD3P31249 NUS1P2-201ENST00000417358 873 ntBASIC13.9□□□□□ -0.18
HOXD3P31249 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXD3P31249 KRT16P4-201ENST00000453883 522 ntBASIC13.9□□□□□ -0.18
HOXD3P31249 BMF-207ENST00000559701 630 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXD3P31249 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.9□□□□□ -0.18
HOXD3P31249 AL353801.3-201ENST00000609898 542 ntBASIC13.9□□□□□ -0.18
HOXD3P31249 AL592071.1-201ENST00000611956 408 ntBASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms