Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
COL5A3P25940 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC22.53■■□□□ 1.2
COL5A3P25940 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC22.53■■□□□ 1.2
COL5A3P25940 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC22.53■■□□□ 1.2
COL5A3P25940 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC22.53■■□□□ 1.2
COL5A3P25940 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC22.53■■□□□ 1.2
COL5A3P25940 AL049757.1-201ENST00000616842 1596 ntBASIC22.53■■□□□ 1.2
COL5A3P25940 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC22.53■■□□□ 1.2
COL5A3P25940 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL5A3P25940 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL5A3P25940 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC22.52■■□□□ 1.2
COL5A3P25940 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC22.52■■□□□ 1.2
COL5A3P25940 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL5A3P25940 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC22.52■■□□□ 1.2
COL5A3P25940 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC22.52■■□□□ 1.2
COL5A3P25940 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL5A3P25940 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL5A3P25940 AC116562.4-201ENST00000641316 2276 ntBASIC22.52■■□□□ 1.2
COL5A3P25940 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.19
COL5A3P25940 PC-214ENST00000628663 1470 ntTSL 5 BASIC22.52■■□□□ 1.19
COL5A3P25940 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC22.51■■□□□ 1.19
COL5A3P25940 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC22.51■■□□□ 1.19
COL5A3P25940 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
COL5A3P25940 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC22.51■■□□□ 1.19
COL5A3P25940 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC22.51■■□□□ 1.19
COL5A3P25940 KRT19P2-202ENST00000557173 1012 ntBASIC22.51■■□□□ 1.19
COL5A3P25940 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC22.51■■□□□ 1.19
COL5A3P25940 AL031432.2-201ENST00000566714 459 ntBASIC22.51■■□□□ 1.19
COL5A3P25940 AL928711.1-201ENST00000570165 459 ntBASIC22.51■■□□□ 1.19
COL5A3P25940 MIR3197-201ENST00000582241 73 ntBASIC22.51■■□□□ 1.19
COL5A3P25940 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
COL5A3P25940 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
COL5A3P25940 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
COL5A3P25940 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
COL5A3P25940 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 METTL26-205ENST00000397666 726 ntTSL 2 BASIC22.51■■□□□ 1.19
COL5A3P25940 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL5A3P25940 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC22.51■■□□□ 1.19
COL5A3P25940 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
COL5A3P25940 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
COL5A3P25940 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC22.51■■□□□ 1.19
COL5A3P25940 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC22.51■■□□□ 1.19
COL5A3P25940 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
COL5A3P25940 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL5A3P25940 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC22.5■■□□□ 1.19
COL5A3P25940 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL5A3P25940 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC22.5■■□□□ 1.19
COL5A3P25940 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC22.5■■□□□ 1.19
COL5A3P25940 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL5A3P25940 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
COL5A3P25940 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL5A3P25940 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC22.5■■□□□ 1.19
COL5A3P25940 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL5A3P25940 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL5A3P25940 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
COL5A3P25940 STOM-202ENST00000347359 870 ntTSL 2 BASIC22.49■■□□□ 1.19
COL5A3P25940 CALY-203ENST00000368558 825 ntTSL 5 BASIC22.49■■□□□ 1.19
COL5A3P25940 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL5A3P25940 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC22.49■■□□□ 1.19
COL5A3P25940 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL5A3P25940 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC22.49■■□□□ 1.19
COL5A3P25940 RHOQP3-201ENST00000437982 621 ntBASIC22.49■■□□□ 1.19
COL5A3P25940 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
COL5A3P25940 CITED2-204ENST00000618718 901 ntTSL 2 BASIC22.49■■□□□ 1.19
COL5A3P25940 AC004790.2-201ENST00000623588 572 ntBASIC22.49■■□□□ 1.19
COL5A3P25940 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL5A3P25940 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC22.49■■□□□ 1.19
COL5A3P25940 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
COL5A3P25940 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC22.49■■□□□ 1.19
COL5A3P25940 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC22.49■■□□□ 1.19
COL5A3P25940 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL5A3P25940 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL5A3P25940 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC22.48■■□□□ 1.19
COL5A3P25940 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC22.48■■□□□ 1.19
COL5A3P25940 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC22.48■■□□□ 1.19
COL5A3P25940 NKTR-203ENST00000442970 646 ntTSL 2 BASIC22.48■■□□□ 1.19
COL5A3P25940 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC22.48■■□□□ 1.19
COL5A3P25940 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC22.48■■□□□ 1.19
COL5A3P25940 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC22.48■■□□□ 1.19
COL5A3P25940 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL5A3P25940 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC22.48■■□□□ 1.19
COL5A3P25940 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms