Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.16■□□□□ 0.98
HLA-DOAP06340 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC21.16■□□□□ 0.98
HLA-DOAP06340 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC21.16■□□□□ 0.98
HLA-DOAP06340 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DOAP06340 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DOAP06340 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DOAP06340 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.16■□□□□ 0.98
HLA-DOAP06340 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HLA-DOAP06340 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.16■□□□□ 0.98
HLA-DOAP06340 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 IL9RP2-201ENST00000423948 1312 ntBASIC21.15■□□□□ 0.98
HLA-DOAP06340 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 SOD2-201ENST00000337404 991 ntTSL 2 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 AC096633.1-201ENST00000422446 749 ntBASIC21.15■□□□□ 0.98
HLA-DOAP06340 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.15■□□□□ 0.98
HLA-DOAP06340 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HLA-DOAP06340 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HLA-DOAP06340 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC21.14■□□□□ 0.98
HLA-DOAP06340 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.14■□□□□ 0.98
HLA-DOAP06340 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.98
HLA-DOAP06340 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.98
HLA-DOAP06340 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
HLA-DOAP06340 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
HLA-DOAP06340 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
HLA-DOAP06340 AL356309.3-201ENST00000624132 1934 ntBASIC21.14■□□□□ 0.98
HLA-DOAP06340 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DOAP06340 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 RPS2P28-201ENST00000314255 741 ntBASIC21.14■□□□□ 0.97
HLA-DOAP06340 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DOAP06340 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DOAP06340 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 BX323043.1-201ENST00000641006 1765 ntBASIC21.14■□□□□ 0.97
HLA-DOAP06340 WIZP1-201ENST00000531444 2299 ntBASIC21.14■□□□□ 0.97
HLA-DOAP06340 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DOAP06340 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
HLA-DOAP06340 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DOAP06340 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HLA-DOAP06340 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 KRT8P47-201ENST00000604727 1398 ntBASIC21.13■□□□□ 0.97
HLA-DOAP06340 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 SART3-203ENST00000546611 1184 ntBASIC21.13■□□□□ 0.97
HLA-DOAP06340 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.13■□□□□ 0.97
HLA-DOAP06340 AL139288.1-201ENST00000623748 933 ntBASIC21.13■□□□□ 0.97
HLA-DOAP06340 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 AC018445.3-201ENST00000624177 1945 ntBASIC21.13■□□□□ 0.97
HLA-DOAP06340 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HLA-DOAP06340 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms