Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC141257.4-201ENST00000634557 245 ntBASIC17.42■□□□□ 0.38
LDLRP01130 AC136944.6-201ENST00000634818 245 ntBASIC17.42■□□□□ 0.38
LDLRP01130 AC068587.9-201ENST00000641814 219 ntBASIC17.42■□□□□ 0.38
LDLRP01130 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
LDLRP01130 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 REXO1L9P-201ENST00000604264 2108 ntBASIC17.42■□□□□ 0.38
LDLRP01130 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
LDLRP01130 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.42■□□□□ 0.38
LDLRP01130 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
LDLRP01130 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.42■□□□□ 0.38
LDLRP01130 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
LDLRP01130 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LDLRP01130 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.41■□□□□ 0.38
LDLRP01130 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LDLRP01130 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
LDLRP01130 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LDLRP01130 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.41■□□□□ 0.38
LDLRP01130 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
LDLRP01130 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.41■□□□□ 0.38
LDLRP01130 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 AC106820.2-201ENST00000563775 3264 ntBASIC17.41■□□□□ 0.38
LDLRP01130 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 HOMER2P1-201ENST00000455653 964 ntBASIC17.41■□□□□ 0.38
LDLRP01130 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.41■□□□□ 0.38
LDLRP01130 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.41■□□□□ 0.38
LDLRP01130 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.41■□□□□ 0.38
LDLRP01130 AC010653.2-201ENST00000623505 997 ntBASIC17.41■□□□□ 0.38
LDLRP01130 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.41■□□□□ 0.38
LDLRP01130 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
LDLRP01130 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LDLRP01130 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LDLRP01130 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LDLRP01130 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.4■□□□□ 0.38
LDLRP01130 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.4■□□□□ 0.38
LDLRP01130 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.4■□□□□ 0.38
LDLRP01130 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
LDLRP01130 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
LDLRP01130 SLC25A1P2-201ENST00000430693 912 ntBASIC17.4■□□□□ 0.38
LDLRP01130 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.4■□□□□ 0.38
LDLRP01130 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.4■□□□□ 0.38
LDLRP01130 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.4■□□□□ 0.38
LDLRP01130 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 PCDHA12-202ENST00000613593 2588 ntBASIC17.4■□□□□ 0.38
LDLRP01130 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
LDLRP01130 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.4■□□□□ 0.38
LDLRP01130 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.4■□□□□ 0.38
LDLRP01130 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 AL645608.8-201ENST00000606034 2086 ntBASIC17.4■□□□□ 0.38
LDLRP01130 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LDLRP01130 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
LDLRP01130 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
LDLRP01130 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
LDLRP01130 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.39■□□□□ 0.38
LDLRP01130 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms