Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MBD4O95243 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MBD4O95243 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MBD4O95243 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
MBD4O95243 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.44■■□□□ 1.02
MBD4O95243 RCN1P2-201ENST00000398357 915 ntBASIC21.44■■□□□ 1.02
MBD4O95243 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.44■■□□□ 1.02
MBD4O95243 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.44■■□□□ 1.02
MBD4O95243 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.44■■□□□ 1.02
MBD4O95243 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.44■■□□□ 1.02
MBD4O95243 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.44■■□□□ 1.02
MBD4O95243 AL691432.3-201ENST00000621860 400 ntBASIC21.44■■□□□ 1.02
MBD4O95243 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MBD4O95243 AC022898.2-201ENST00000616822 1312 ntBASIC21.44■■□□□ 1.02
MBD4O95243 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MBD4O95243 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.44■■□□□ 1.02
MBD4O95243 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MBD4O95243 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
MBD4O95243 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
MBD4O95243 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
MBD4O95243 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MBD4O95243 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
MBD4O95243 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.43■■□□□ 1.02
MBD4O95243 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.43■■□□□ 1.02
MBD4O95243 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.43■■□□□ 1.02
MBD4O95243 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 POM121L3P-201ENST00000419331 1163 ntBASIC21.43■■□□□ 1.02
MBD4O95243 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.43■■□□□ 1.02
MBD4O95243 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.43■■□□□ 1.02
MBD4O95243 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
MBD4O95243 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.43■■□□□ 1.02
MBD4O95243 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
MBD4O95243 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.43■■□□□ 1.02
MBD4O95243 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.43■■□□□ 1.02
MBD4O95243 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
MBD4O95243 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.43■■□□□ 1.02
MBD4O95243 ABALON-201ENST00000629058 1903 ntBASIC21.43■■□□□ 1.02
MBD4O95243 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.43■■□□□ 1.02
MBD4O95243 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
MBD4O95243 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
MBD4O95243 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.42■■□□□ 1.02
MBD4O95243 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC21.42■■□□□ 1.02
MBD4O95243 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
MBD4O95243 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.42■■□□□ 1.02
MBD4O95243 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.42■■□□□ 1.02
MBD4O95243 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
MBD4O95243 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 KRT16P4-201ENST00000453883 522 ntBASIC21.42■■□□□ 1.02
MBD4O95243 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.42■■□□□ 1.02
MBD4O95243 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC21.42■■□□□ 1.02
MBD4O95243 AC009533.2-201ENST00000543664 586 ntBASIC21.42■■□□□ 1.02
MBD4O95243 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.42■■□□□ 1.02
MBD4O95243 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MBD4O95243 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.42■■□□□ 1.02
MBD4O95243 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.42■■□□□ 1.02
MBD4O95243 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.42■■□□□ 1.02
MBD4O95243 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.42■■□□□ 1.02
MBD4O95243 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MBD4O95243 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MBD4O95243 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
MBD4O95243 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MBD4O95243 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MBD4O95243 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.41■■□□□ 1.02
MBD4O95243 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.41■■□□□ 1.02
MBD4O95243 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MBD4O95243 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MBD4O95243 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.41■■□□□ 1.02
MBD4O95243 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MBD4O95243 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.41■■□□□ 1.02
MBD4O95243 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC21.41■■□□□ 1.02
MBD4O95243 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.41■■□□□ 1.02
MBD4O95243 EMBP1-201ENST00000458200 901 ntBASIC21.41■■□□□ 1.02
MBD4O95243 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC21.41■■□□□ 1.02
MBD4O95243 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.41■■□□□ 1.02
MBD4O95243 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms