Protein–RNA interactions for Protein: O43395

PRPF3, U4/U6 small nuclear ribonucleoprotein Prp3, humanhuman

Known RBP Predictions only

Length 683 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3O43395 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF3O43395 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
PRPF3O43395 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF3O43395 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PRPF3O43395 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF3O43395 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF3O43395 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
PRPF3O43395 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.7■□□□□ 0.9
PRPF3O43395 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF3O43395 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF3O43395 AL133373.2-201ENST00000623187 2828 ntBASIC20.7■□□□□ 0.9
PRPF3O43395 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF3O43395 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF3O43395 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.7■□□□□ 0.9
PRPF3O43395 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
PRPF3O43395 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.7■□□□□ 0.9
PRPF3O43395 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
PRPF3O43395 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
PRPF3O43395 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF3O43395 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.7■□□□□ 0.9
PRPF3O43395 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.7■□□□□ 0.9
PRPF3O43395 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF3O43395 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF3O43395 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF3O43395 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.7■□□□□ 0.9
PRPF3O43395 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.69■□□□□ 0.9
PRPF3O43395 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PRPF3O43395 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.69■□□□□ 0.9
PRPF3O43395 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PRPF3O43395 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.69■□□□□ 0.9
PRPF3O43395 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.69■□□□□ 0.9
PRPF3O43395 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.69■□□□□ 0.9
PRPF3O43395 AC069148.1-201ENST00000608741 768 ntBASIC20.69■□□□□ 0.9
PRPF3O43395 NPAP1P7-201ENST00000613027 823 ntBASIC20.69■□□□□ 0.9
PRPF3O43395 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.69■□□□□ 0.9
PRPF3O43395 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
PRPF3O43395 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.69■□□□□ 0.9
PRPF3O43395 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF3O43395 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PRPF3O43395 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PRPF3O43395 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF3O43395 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.68■□□□□ 0.9
PRPF3O43395 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF3O43395 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF3O43395 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF3O43395 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF3O43395 DRAXINP1-201ENST00000437611 948 ntBASIC20.68■□□□□ 0.9
PRPF3O43395 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.68■□□□□ 0.9
PRPF3O43395 MIR3180-1-201ENST00000580374 94 ntBASIC20.68■□□□□ 0.9
PRPF3O43395 MIR3180-3-201ENST00000584616 94 ntBASIC20.68■□□□□ 0.9
PRPF3O43395 AC116407.2-201ENST00000613639 860 ntBASIC20.68■□□□□ 0.9
PRPF3O43395 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF3O43395 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF3O43395 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF3O43395 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
PRPF3O43395 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF3O43395 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF3O43395 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF3O43395 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF3O43395 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
PRPF3O43395 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PRPF3O43395 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.67■□□□□ 0.9
PRPF3O43395 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
PRPF3O43395 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PRPF3O43395 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.67■□□□□ 0.9
PRPF3O43395 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PRPF3O43395 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.67■□□□□ 0.9
PRPF3O43395 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.67■□□□□ 0.9
PRPF3O43395 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 TPSP2-201ENST00000561760 610 ntBASIC20.67■□□□□ 0.9
PRPF3O43395 AC011840.4-201ENST00000578471 627 ntBASIC20.67■□□□□ 0.9
PRPF3O43395 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.67■□□□□ 0.9
PRPF3O43395 AP002414.4-201ENST00000589764 1148 ntBASIC20.67■□□□□ 0.9
PRPF3O43395 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 KRT18P1-202ENST00000452408 1331 ntBASIC20.67■□□□□ 0.9
PRPF3O43395 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PRPF3O43395 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF3O43395 AC009949.1-201ENST00000623048 1830 ntBASIC20.67■□□□□ 0.9
PRPF3O43395 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PRPF3O43395 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PRPF3O43395 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF3O43395 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms