Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.66■□□□□ 0.74
CLDN3O15551 Z69720.1-201ENST00000601483 472 ntBASIC19.66■□□□□ 0.74
CLDN3O15551 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.66■□□□□ 0.74
CLDN3O15551 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.66■□□□□ 0.74
CLDN3O15551 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CLDN3O15551 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CLDN3O15551 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CLDN3O15551 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CLDN3O15551 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.66■□□□□ 0.74
CLDN3O15551 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CLDN3O15551 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.65■□□□□ 0.74
CLDN3O15551 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.65■□□□□ 0.74
CLDN3O15551 AC005332.8-201ENST00000622750 2735 ntBASIC19.65■□□□□ 0.74
CLDN3O15551 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CLDN3O15551 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.65■□□□□ 0.74
CLDN3O15551 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 AL845331.1-201ENST00000424978 1190 ntBASIC19.65■□□□□ 0.74
CLDN3O15551 AL353801.3-201ENST00000609898 542 ntBASIC19.65■□□□□ 0.74
CLDN3O15551 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.65■□□□□ 0.74
CLDN3O15551 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.65■□□□□ 0.74
CLDN3O15551 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.65■□□□□ 0.74
CLDN3O15551 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.65■□□□□ 0.74
CLDN3O15551 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CLDN3O15551 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.65■□□□□ 0.74
CLDN3O15551 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.65■□□□□ 0.74
CLDN3O15551 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.65■□□□□ 0.74
CLDN3O15551 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.65■□□□□ 0.74
CLDN3O15551 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.65■□□□□ 0.74
CLDN3O15551 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.65■□□□□ 0.74
CLDN3O15551 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.65■□□□□ 0.74
CLDN3O15551 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 AL133373.2-201ENST00000623187 2828 ntBASIC19.65■□□□□ 0.74
CLDN3O15551 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN3O15551 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLDN3O15551 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
CLDN3O15551 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.64■□□□□ 0.74
CLDN3O15551 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLDN3O15551 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.64■□□□□ 0.74
CLDN3O15551 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLDN3O15551 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
CLDN3O15551 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CLDN3O15551 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.64■□□□□ 0.73
CLDN3O15551 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.64■□□□□ 0.73
CLDN3O15551 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.64■□□□□ 0.73
CLDN3O15551 DUTP2-201ENST00000519164 463 ntBASIC19.64■□□□□ 0.73
CLDN3O15551 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 MIR3652-201ENST00000579335 131 ntBASIC19.64■□□□□ 0.73
CLDN3O15551 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
CLDN3O15551 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CLDN3O15551 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.64■□□□□ 0.73
CLDN3O15551 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.64■□□□□ 0.73
CLDN3O15551 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.64■□□□□ 0.73
CLDN3O15551 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN3O15551 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.64■□□□□ 0.73
CLDN3O15551 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
CLDN3O15551 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CLDN3O15551 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.63■□□□□ 0.73
CLDN3O15551 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.63■□□□□ 0.73
CLDN3O15551 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CLDN3O15551 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CLDN3O15551 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN3O15551 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms