Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
UPK1AO00322 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
UPK1AO00322 AL024508.2-201ENST00000607749 1894 ntBASIC17.09■□□□□ 0.33
UPK1AO00322 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UPK1AO00322 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UPK1AO00322 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
UPK1AO00322 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
UPK1AO00322 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UPK1AO00322 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
UPK1AO00322 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
UPK1AO00322 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
UPK1AO00322 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UPK1AO00322 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
UPK1AO00322 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
UPK1AO00322 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
UPK1AO00322 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
UPK1AO00322 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.08■□□□□ 0.33
UPK1AO00322 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
UPK1AO00322 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
UPK1AO00322 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
UPK1AO00322 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.08■□□□□ 0.33
UPK1AO00322 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
UPK1AO00322 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.08■□□□□ 0.32
UPK1AO00322 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.08■□□□□ 0.32
UPK1AO00322 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
UPK1AO00322 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.08■□□□□ 0.32
UPK1AO00322 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.08■□□□□ 0.32
UPK1AO00322 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.08■□□□□ 0.32
UPK1AO00322 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.08■□□□□ 0.32
UPK1AO00322 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
UPK1AO00322 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.08■□□□□ 0.32
UPK1AO00322 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.08■□□□□ 0.32
UPK1AO00322 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.08■□□□□ 0.32
UPK1AO00322 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.08■□□□□ 0.32
UPK1AO00322 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
UPK1AO00322 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
UPK1AO00322 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.08■□□□□ 0.32
UPK1AO00322 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.08■□□□□ 0.32
UPK1AO00322 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.08■□□□□ 0.32
UPK1AO00322 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 AP001094.4-201ENST00000579008 2176 ntBASIC17.08■□□□□ 0.32
UPK1AO00322 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
UPK1AO00322 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.08■□□□□ 0.32
UPK1AO00322 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.07■□□□□ 0.32
UPK1AO00322 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
UPK1AO00322 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.07■□□□□ 0.32
UPK1AO00322 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.07■□□□□ 0.32
UPK1AO00322 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.07■□□□□ 0.32
UPK1AO00322 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.07■□□□□ 0.32
UPK1AO00322 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.07■□□□□ 0.32
UPK1AO00322 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.07■□□□□ 0.32
UPK1AO00322 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.07■□□□□ 0.32
UPK1AO00322 AL157888.1-201ENST00000631930 593 ntBASIC17.07■□□□□ 0.32
UPK1AO00322 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
UPK1AO00322 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.07■□□□□ 0.32
UPK1AO00322 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
UPK1AO00322 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
UPK1AO00322 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
UPK1AO00322 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.07■□□□□ 0.32
UPK1AO00322 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.07■□□□□ 0.32
UPK1AO00322 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
UPK1AO00322 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.07■□□□□ 0.32
UPK1AO00322 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
UPK1AO00322 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
UPK1AO00322 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.06■□□□□ 0.32
UPK1AO00322 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.06■□□□□ 0.32
UPK1AO00322 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
UPK1AO00322 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
UPK1AO00322 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
UPK1AO00322 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.06■□□□□ 0.32
UPK1AO00322 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
UPK1AO00322 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
UPK1AO00322 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms