Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC004877.2-201ENST00000623941 599 ntBASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 CR383656.12-201ENST00000549567 513 ntBASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 MIR4751-201ENST00000578027 74 ntBASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A6A6NMZ7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
COL6A6A6NMZ7 LINC00602-201ENST00000629776 2065 ntBASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 GABARAPL3-202ENST00000624044 1851 ntBASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 NCF1C-201ENST00000438382 1427 ntBASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 RHOQP3-201ENST00000437982 621 ntBASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 AC093520.2-201ENST00000561830 333 ntBASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A6A6NMZ7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 FP475955.4-201ENST00000623131 1990 ntBASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 AL627223.1-201ENST00000416693 442 ntBASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 AC051619.7-201ENST00000568314 623 ntBASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A6A6NMZ7 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms