Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 GCSHP2-201ENST00000560971 527 ntBASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 AC009053.2-201ENST00000563701 2365 ntBASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.31■□□□□ 0.52
TCRBV7S3A2A0A539 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.3■□□□□ 0.52
TCRBV7S3A2A0A539 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 AL512604.3-201ENST00000569583 964 ntBASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 AL138966.2-201ENST00000621997 464 ntBASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 AC141257.4-201ENST00000634557 245 ntBASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 AC136944.6-201ENST00000634818 245 ntBASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TCRBV7S3A2A0A539 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.28■□□□□ 0.52
TCRBV7S3A2A0A539 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms