Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 INIP-202ENST00000374236 874 ntTSL 2 BASIC34.07■■■■□ 3.05
SHROOM4Q9ULL8 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.05
SHROOM4Q9ULL8 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC34.07■■■■□ 3.05
SHROOM4Q9ULL8 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC34.07■■■■□ 3.05
SHROOM4Q9ULL8 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC34.07■■■■□ 3.05
SHROOM4Q9ULL8 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC34.07■■■■□ 3.05
SHROOM4Q9ULL8 PRR29-209ENST00000582540 967 ntTSL 2 BASIC34.07■■■■□ 3.05
SHROOM4Q9ULL8 AC064836.3-201ENST00000607928 673 ntBASIC34.07■■■■□ 3.05
SHROOM4Q9ULL8 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 AC011467.4-201ENST00000594891 528 ntBASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
SHROOM4Q9ULL8 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
SHROOM4Q9ULL8 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC34.06■■■■□ 3.04
SHROOM4Q9ULL8 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC34.06■■■■□ 3.04
SHROOM4Q9ULL8 CROCCP3-202ENST00000420820 1947 ntBASIC34.06■■■■□ 3.04
SHROOM4Q9ULL8 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
SHROOM4Q9ULL8 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
SHROOM4Q9ULL8 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC34.06■■■■□ 3.04
SHROOM4Q9ULL8 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC34.06■■■■□ 3.04
SHROOM4Q9ULL8 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC34.06■■■■□ 3.04
SHROOM4Q9ULL8 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 CENPM-204ENST00000402420 688 ntTSL 5 BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 MTCL1P1-201ENST00000446207 792 ntBASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC34.05■■■■□ 3.04
SHROOM4Q9ULL8 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 AC132938.6-201ENST00000623828 1655 ntBASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 RNF151-202ENST00000569210 853 ntTSL 2 BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 AC125634.1-201ENST00000438758 1403 ntBASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
SHROOM4Q9ULL8 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC34.03■■■■□ 3.04
SHROOM4Q9ULL8 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 AL645939.2-201ENST00000427340 991 ntBASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC34.02■■■■□ 3.04
SHROOM4Q9ULL8 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 AC092364.2-202ENST00000597012 1073 ntBASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 MTDHP4-201ENST00000600287 670 ntBASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.04
SHROOM4Q9ULL8 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.03
SHROOM4Q9ULL8 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC34.01■■■■□ 3.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms