Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TMPOP1-202ENST00000424642 1267 ntBASIC18.64■□□□□ 0.57
PCDH9Q9HC56 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 AL441883.1-201ENST00000566170 1045 ntBASIC18.64■□□□□ 0.57
PCDH9Q9HC56 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 AC010240.3-201ENST00000607688 395 ntBASIC18.64■□□□□ 0.57
PCDH9Q9HC56 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCDH9Q9HC56 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 AC104076.2-201ENST00000448912 469 ntBASIC18.63■□□□□ 0.57
PCDH9Q9HC56 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 HTR7P1-202ENST00000624664 4411 ntBASIC18.63■□□□□ 0.57
PCDH9Q9HC56 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.63■□□□□ 0.57
PCDH9Q9HC56 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 AK4P3-201ENST00000418260 669 ntBASIC18.62■□□□□ 0.57
PCDH9Q9HC56 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCDH9Q9HC56 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 DUTP2-201ENST00000519164 463 ntBASIC18.61■□□□□ 0.57
PCDH9Q9HC56 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 MIR3917-201ENST00000580971 93 ntBASIC18.61■□□□□ 0.57
PCDH9Q9HC56 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.61■□□□□ 0.57
PCDH9Q9HC56 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCDH9Q9HC56 SIRPAP1-201ENST00000448467 1770 ntBASIC18.6■□□□□ 0.57
PCDH9Q9HC56 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms