Protein–RNA interactions for Protein: Q8TEJ3

SH3RF3, SH3 domain-containing RING finger protein 3, humanhuman

Predicted RBP Predictions only

Length 882 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF3Q8TEJ3 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 HNRNPDP1-201ENST00000439535 754 ntBASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 DUTP2-201ENST00000519164 463 ntBASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 SART3-203ENST00000546611 1184 ntBASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 AL049840.3-201ENST00000602669 611 ntBASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 AC120114.3-201ENST00000611923 658 ntBASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 AC004408.2-201ENST00000623613 2777 ntBASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SH3RF3Q8TEJ3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 AL590627.1-203ENST00000421194 1026 ntBASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 AC096633.1-201ENST00000422446 749 ntBASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 ABBA01031661.1-201ENST00000634362 1253 ntBASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 AL138781.2-201ENST00000617896 1843 ntBASIC21.33■■□□□ 1.01
SH3RF3Q8TEJ3 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SH3RF3Q8TEJ3 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SH3RF3Q8TEJ3 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SH3RF3Q8TEJ3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SH3RF3Q8TEJ3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 FAM220CP-201ENST00000395253 831 ntBASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 BX640515.1-201ENST00000617215 977 ntBASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.32■■□□□ 1
SH3RF3Q8TEJ3 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 MIR7706-201ENST00000613747 67 ntBASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 NME4-212ENST00000621774 904 ntTSL 3 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 AC243591.1-201ENST00000452967 1364 ntBASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF3Q8TEJ3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF3Q8TEJ3 IL9RP2-201ENST00000423948 1312 ntBASIC21.3■■□□□ 1
SH3RF3Q8TEJ3 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.3■■□□□ 1
SH3RF3Q8TEJ3 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.3■■□□□ 1
SH3RF3Q8TEJ3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF3Q8TEJ3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.3■■□□□ 1
SH3RF3Q8TEJ3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF3Q8TEJ3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms