Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 UNC93B2-201ENST00000285383 730 ntBASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 TSPY15P-201ENST00000457163 923 ntBASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 AL160286.2-201ENST00000567150 934 ntBASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PPP4R4Q6NUP7 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 AC004980.1-204ENST00000429707 299 ntBASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 TSPY23P-201ENST00000440136 739 ntBASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 MIR6786-201ENST00000616843 113 ntBASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 AC011298.2-201ENST00000617989 482 ntBASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 AC022211.2-201ENST00000585075 2527 ntBASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
PPP4R4Q6NUP7 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 NKILA-202ENST00000614771 2598 ntBASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 MIR1238-201ENST00000408483 83 ntBASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 AP000525.1-201ENST00000608286 694 ntBASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 KRT8P45-201ENST00000414328 1447 ntBASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PPP4R4Q6NUP7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PPP4R4Q6NUP7 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PPP4R4Q6NUP7 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms