Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.49■□□□□ 0.71
KRT39Q6A163 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
KRT39Q6A163 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.48■□□□□ 0.71
KRT39Q6A163 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.48■□□□□ 0.71
KRT39Q6A163 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.48■□□□□ 0.71
KRT39Q6A163 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
KRT39Q6A163 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.48■□□□□ 0.71
KRT39Q6A163 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.48■□□□□ 0.71
KRT39Q6A163 AL645929.1-201ENST00000420084 975 ntBASIC19.48■□□□□ 0.71
KRT39Q6A163 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.48■□□□□ 0.71
KRT39Q6A163 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.48■□□□□ 0.71
KRT39Q6A163 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.48■□□□□ 0.71
KRT39Q6A163 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.48■□□□□ 0.71
KRT39Q6A163 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.48■□□□□ 0.71
KRT39Q6A163 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 AL136038.3-201ENST00000561909 1096 ntBASIC19.48■□□□□ 0.71
KRT39Q6A163 RNF126P1-202ENST00000569893 925 ntBASIC19.48■□□□□ 0.71
KRT39Q6A163 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.48■□□□□ 0.71
KRT39Q6A163 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.48■□□□□ 0.71
KRT39Q6A163 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
KRT39Q6A163 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
KRT39Q6A163 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.48■□□□□ 0.71
KRT39Q6A163 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
KRT39Q6A163 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.47■□□□□ 0.71
KRT39Q6A163 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
KRT39Q6A163 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.47■□□□□ 0.71
KRT39Q6A163 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
KRT39Q6A163 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
KRT39Q6A163 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 TSPY12P-201ENST00000421279 868 ntBASIC19.47■□□□□ 0.71
KRT39Q6A163 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.47■□□□□ 0.71
KRT39Q6A163 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.47■□□□□ 0.71
KRT39Q6A163 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.47■□□□□ 0.71
KRT39Q6A163 AL390719.2-201ENST00000606993 987 ntBASIC19.47■□□□□ 0.71
KRT39Q6A163 AC009154.2-201ENST00000621177 724 ntBASIC19.47■□□□□ 0.71
KRT39Q6A163 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
KRT39Q6A163 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.47■□□□□ 0.71
KRT39Q6A163 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
KRT39Q6A163 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.46■□□□□ 0.71
KRT39Q6A163 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
KRT39Q6A163 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.46■□□□□ 0.71
KRT39Q6A163 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
KRT39Q6A163 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.46■□□□□ 0.71
KRT39Q6A163 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.46■□□□□ 0.71
KRT39Q6A163 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 AL121956.5-201ENST00000625261 221 ntBASIC19.46■□□□□ 0.71
KRT39Q6A163 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
KRT39Q6A163 Z83836.1-201ENST00000624605 1642 ntBASIC19.46■□□□□ 0.71
KRT39Q6A163 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.46■□□□□ 0.71
KRT39Q6A163 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
KRT39Q6A163 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
KRT39Q6A163 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.45■□□□□ 0.7
KRT39Q6A163 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.45■□□□□ 0.7
KRT39Q6A163 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
KRT39Q6A163 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
KRT39Q6A163 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
KRT39Q6A163 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
KRT39Q6A163 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms