Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 SLC25A3P1-201ENST00000443844 931 ntBASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC40Q4G0X9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 LIN28AP1-201ENST00000429574 405 ntBASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC40Q4G0X9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 AL138966.2-201ENST00000621997 464 ntBASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 AL023973.1-201ENST00000624619 620 ntBASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC40Q4G0X9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CCDC40Q4G0X9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms