Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
RNF4P78317 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF4P78317 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
RNF4P78317 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
RNF4P78317 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF4P78317 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF4P78317 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
RNF4P78317 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF4P78317 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.67■□□□□ 0.26
RNF4P78317 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.67■□□□□ 0.26
RNF4P78317 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 AC012615.1-201ENST00000565797 1299 ntBASIC16.67■□□□□ 0.26
RNF4P78317 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF4P78317 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF4P78317 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF4P78317 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF4P78317 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.67■□□□□ 0.26
RNF4P78317 REXO1L9P-201ENST00000604264 2108 ntBASIC16.67■□□□□ 0.26
RNF4P78317 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
RNF4P78317 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF4P78317 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.67■□□□□ 0.26
RNF4P78317 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
RNF4P78317 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.67■□□□□ 0.26
RNF4P78317 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
RNF4P78317 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
RNF4P78317 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
RNF4P78317 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
RNF4P78317 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF4P78317 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF4P78317 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF4P78317 DUTP2-201ENST00000519164 463 ntBASIC16.66■□□□□ 0.26
RNF4P78317 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.66■□□□□ 0.26
RNF4P78317 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF4P78317 AC074051.2-201ENST00000565115 352 ntBASIC16.66■□□□□ 0.26
RNF4P78317 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF4P78317 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.66■□□□□ 0.26
RNF4P78317 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
RNF4P78317 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.66■□□□□ 0.26
RNF4P78317 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
RNF4P78317 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.66■□□□□ 0.26
RNF4P78317 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
RNF4P78317 BICD1-207ENST00000551848 1962 ntBASIC16.66■□□□□ 0.26
RNF4P78317 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
RNF4P78317 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.65■□□□□ 0.26
RNF4P78317 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
RNF4P78317 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.65■□□□□ 0.26
RNF4P78317 KRT17P6-201ENST00000453795 1220 ntBASIC16.65■□□□□ 0.26
RNF4P78317 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.65■□□□□ 0.26
RNF4P78317 AC091607.1-201ENST00000490318 1060 ntBASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms