Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SRP54P61011 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.76■□□□□ 0.43
SRP54P61011 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.76■□□□□ 0.43
SRP54P61011 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
SRP54P61011 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.76■□□□□ 0.43
SRP54P61011 AC096582.2-201ENST00000510860 516 ntBASIC17.76■□□□□ 0.43
SRP54P61011 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.76■□□□□ 0.43
SRP54P61011 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.76■□□□□ 0.43
SRP54P61011 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SRP54P61011 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SRP54P61011 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SRP54P61011 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
SRP54P61011 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.76■□□□□ 0.43
SRP54P61011 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SRP54P61011 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.75■□□□□ 0.43
SRP54P61011 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
SRP54P61011 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.75■□□□□ 0.43
SRP54P61011 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.75■□□□□ 0.43
SRP54P61011 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 KRT8P10-201ENST00000450021 1447 ntBASIC17.75■□□□□ 0.43
SRP54P61011 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
SRP54P61011 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.75■□□□□ 0.43
SRP54P61011 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 AC079781.3-201ENST00000449110 356 ntBASIC17.75■□□□□ 0.43
SRP54P61011 FDX1P1-201ENST00000449115 551 ntBASIC17.75■□□□□ 0.43
SRP54P61011 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.75■□□□□ 0.43
SRP54P61011 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.75■□□□□ 0.43
SRP54P61011 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.75■□□□□ 0.43
SRP54P61011 AC005336.2-201ENST00000593183 939 ntBASIC17.75■□□□□ 0.43
SRP54P61011 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.75■□□□□ 0.43
SRP54P61011 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.75■□□□□ 0.43
SRP54P61011 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
SRP54P61011 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SRP54P61011 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SRP54P61011 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.75■□□□□ 0.43
SRP54P61011 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.74■□□□□ 0.43
SRP54P61011 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SRP54P61011 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SRP54P61011 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.74■□□□□ 0.43
SRP54P61011 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.74■□□□□ 0.43
SRP54P61011 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.74■□□□□ 0.43
SRP54P61011 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.74■□□□□ 0.43
SRP54P61011 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.74■□□□□ 0.43
SRP54P61011 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.74■□□□□ 0.43
SRP54P61011 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.74■□□□□ 0.43
SRP54P61011 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 MIR5100-201ENST00000579544 119 ntBASIC17.74■□□□□ 0.43
SRP54P61011 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.74■□□□□ 0.43
SRP54P61011 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.74■□□□□ 0.43
SRP54P61011 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.74■□□□□ 0.43
SRP54P61011 AC104692.2-201ENST00000603054 253 ntBASIC17.74■□□□□ 0.43
SRP54P61011 AL591684.3-201ENST00000605187 298 ntBASIC17.74■□□□□ 0.43
SRP54P61011 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SRP54P61011 ESPNP-201ENST00000270691 2015 ntBASIC17.74■□□□□ 0.43
SRP54P61011 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.74■□□□□ 0.43
SRP54P61011 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SRP54P61011 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.73■□□□□ 0.43
SRP54P61011 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms