Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 AC069148.1-201ENST00000608741 768 ntBASIC18.6■□□□□ 0.57
NEK3P51956 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
NEK3P51956 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.6■□□□□ 0.57
NEK3P51956 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NEK3P51956 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.6■□□□□ 0.57
NEK3P51956 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
NEK3P51956 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.59■□□□□ 0.57
NEK3P51956 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NEK3P51956 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 AC112777.1-201ENST00000540175 1423 ntBASIC18.59■□□□□ 0.57
NEK3P51956 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.59■□□□□ 0.57
NEK3P51956 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.59■□□□□ 0.57
NEK3P51956 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.59■□□□□ 0.57
NEK3P51956 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.59■□□□□ 0.57
NEK3P51956 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.59■□□□□ 0.57
NEK3P51956 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.59■□□□□ 0.57
NEK3P51956 AC093458.2-201ENST00000623150 629 ntBASIC18.59■□□□□ 0.57
NEK3P51956 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.59■□□□□ 0.57
NEK3P51956 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
NEK3P51956 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.59■□□□□ 0.57
NEK3P51956 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NEK3P51956 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
NEK3P51956 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.59■□□□□ 0.57
NEK3P51956 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NEK3P51956 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
NEK3P51956 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
NEK3P51956 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NEK3P51956 AC138028.4-201ENST00000564984 1845 ntBASIC18.58■□□□□ 0.57
NEK3P51956 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
NEK3P51956 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.58■□□□□ 0.57
NEK3P51956 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.58■□□□□ 0.57
NEK3P51956 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
NEK3P51956 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NEK3P51956 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
NEK3P51956 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.58■□□□□ 0.56
NEK3P51956 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.58■□□□□ 0.56
NEK3P51956 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.58■□□□□ 0.56
NEK3P51956 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.58■□□□□ 0.56
NEK3P51956 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
NEK3P51956 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
NEK3P51956 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.58■□□□□ 0.56
NEK3P51956 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NEK3P51956 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.58■□□□□ 0.56
NEK3P51956 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.58■□□□□ 0.56
NEK3P51956 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
NEK3P51956 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
NEK3P51956 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
NEK3P51956 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.57■□□□□ 0.56
NEK3P51956 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.57■□□□□ 0.56
NEK3P51956 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
NEK3P51956 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.57■□□□□ 0.56
NEK3P51956 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 AP000593.1-201ENST00000393668 712 ntBASIC18.57■□□□□ 0.56
NEK3P51956 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.57■□□□□ 0.56
NEK3P51956 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.57■□□□□ 0.56
NEK3P51956 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.57■□□□□ 0.56
NEK3P51956 KRT18P41-201ENST00000518924 1277 ntBASIC18.57■□□□□ 0.56
NEK3P51956 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.57■□□□□ 0.56
NEK3P51956 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.57■□□□□ 0.56
NEK3P51956 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.57■□□□□ 0.56
NEK3P51956 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
NEK3P51956 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.57■□□□□ 0.56
NEK3P51956 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NEK3P51956 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
NEK3P51956 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms