Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
LIG3P49916 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.97■□□□□ 0.63
LIG3P49916 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.97■□□□□ 0.63
LIG3P49916 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.97■□□□□ 0.63
LIG3P49916 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
LIG3P49916 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.97■□□□□ 0.63
LIG3P49916 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LIG3P49916 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
LIG3P49916 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
LIG3P49916 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.96■□□□□ 0.63
LIG3P49916 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
LIG3P49916 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.96■□□□□ 0.63
LIG3P49916 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.96■□□□□ 0.63
LIG3P49916 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.96■□□□□ 0.63
LIG3P49916 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.96■□□□□ 0.63
LIG3P49916 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.96■□□□□ 0.63
LIG3P49916 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.96■□□□□ 0.63
LIG3P49916 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.96■□□□□ 0.63
LIG3P49916 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LIG3P49916 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
LIG3P49916 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.96■□□□□ 0.63
LIG3P49916 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.96■□□□□ 0.63
LIG3P49916 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.96■□□□□ 0.63
LIG3P49916 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.96■□□□□ 0.63
LIG3P49916 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LIG3P49916 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.95■□□□□ 0.62
LIG3P49916 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LIG3P49916 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
LIG3P49916 MIR1224-201ENST00000408193 85 ntBASIC18.95■□□□□ 0.62
LIG3P49916 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.95■□□□□ 0.62
LIG3P49916 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.95■□□□□ 0.62
LIG3P49916 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
LIG3P49916 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
LIG3P49916 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
LIG3P49916 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
LIG3P49916 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
LIG3P49916 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIG3P49916 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
LIG3P49916 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.94■□□□□ 0.62
LIG3P49916 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
LIG3P49916 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.94■□□□□ 0.62
LIG3P49916 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.94■□□□□ 0.62
LIG3P49916 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
LIG3P49916 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.94■□□□□ 0.62
LIG3P49916 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.94■□□□□ 0.62
LIG3P49916 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
LIG3P49916 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIG3P49916 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.93■□□□□ 0.62
LIG3P49916 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms