Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TSPY22P-201ENST00000427496 604 ntBASIC18.74■□□□□ 0.59
PTPN9P43378 AC068472.1-201ENST00000474589 881 ntBASIC18.74■□□□□ 0.59
PTPN9P43378 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.74■□□□□ 0.59
PTPN9P43378 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.74■□□□□ 0.59
PTPN9P43378 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.74■□□□□ 0.59
PTPN9P43378 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.74■□□□□ 0.59
PTPN9P43378 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.74■□□□□ 0.59
PTPN9P43378 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.74■□□□□ 0.59
PTPN9P43378 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.74■□□□□ 0.59
PTPN9P43378 AL133373.2-201ENST00000623187 2828 ntBASIC18.74■□□□□ 0.59
PTPN9P43378 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
PTPN9P43378 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN9P43378 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.74■□□□□ 0.59
PTPN9P43378 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 KRT8P47-201ENST00000604727 1398 ntBASIC18.73■□□□□ 0.59
PTPN9P43378 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.73■□□□□ 0.59
PTPN9P43378 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.73■□□□□ 0.59
PTPN9P43378 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.73■□□□□ 0.59
PTPN9P43378 AC112698.1-201ENST00000510299 916 ntBASIC18.73■□□□□ 0.59
PTPN9P43378 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.73■□□□□ 0.59
PTPN9P43378 AC087388.1-201ENST00000571370 1112 ntBASIC18.73■□□□□ 0.59
PTPN9P43378 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.73■□□□□ 0.59
PTPN9P43378 AC116407.4-201ENST00000623319 1061 ntBASIC18.73■□□□□ 0.59
PTPN9P43378 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
PTPN9P43378 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
PTPN9P43378 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.73■□□□□ 0.59
PTPN9P43378 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
PTPN9P43378 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PTPN9P43378 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.72■□□□□ 0.59
PTPN9P43378 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.72■□□□□ 0.59
PTPN9P43378 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.72■□□□□ 0.59
PTPN9P43378 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.72■□□□□ 0.59
PTPN9P43378 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
PTPN9P43378 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.72■□□□□ 0.59
PTPN9P43378 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.72■□□□□ 0.59
PTPN9P43378 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.72■□□□□ 0.59
PTPN9P43378 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PTPN9P43378 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
PTPN9P43378 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.72■□□□□ 0.59
PTPN9P43378 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.72■□□□□ 0.59
PTPN9P43378 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
PTPN9P43378 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PTPN9P43378 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN9P43378 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
PTPN9P43378 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.71■□□□□ 0.59
PTPN9P43378 MTCL1P1-201ENST00000446207 792 ntBASIC18.71■□□□□ 0.59
PTPN9P43378 KRT8P26-201ENST00000534154 1276 ntBASIC18.71■□□□□ 0.59
PTPN9P43378 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
PTPN9P43378 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.71■□□□□ 0.59
PTPN9P43378 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.71■□□□□ 0.59
PTPN9P43378 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.71■□□□□ 0.59
PTPN9P43378 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTPN9P43378 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms