Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC30■■■□□ 2.39
CUX1P39880 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC30■■■□□ 2.39
CUX1P39880 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CUX1P39880 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
CUX1P39880 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC29.99■■■□□ 2.39
CUX1P39880 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CUX1P39880 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC29.99■■■□□ 2.39
CUX1P39880 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
CUX1P39880 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
CUX1P39880 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CUX1P39880 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
CUX1P39880 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC29.99■■■□□ 2.39
CUX1P39880 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC29.99■■■□□ 2.39
CUX1P39880 AL031432.2-201ENST00000566714 459 ntBASIC29.99■■■□□ 2.39
CUX1P39880 AL928711.1-201ENST00000570165 459 ntBASIC29.99■■■□□ 2.39
CUX1P39880 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC29.99■■■□□ 2.39
CUX1P39880 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC29.99■■■□□ 2.39
CUX1P39880 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CUX1P39880 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC29.99■■■□□ 2.39
CUX1P39880 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CUX1P39880 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
CUX1P39880 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC29.98■■■□□ 2.39
CUX1P39880 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
CUX1P39880 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC29.98■■■□□ 2.39
CUX1P39880 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC29.98■■■□□ 2.39
CUX1P39880 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC29.98■■■□□ 2.39
CUX1P39880 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CUX1P39880 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC29.98■■■□□ 2.39
CUX1P39880 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC29.98■■■□□ 2.39
CUX1P39880 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC29.98■■■□□ 2.39
CUX1P39880 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC29.98■■■□□ 2.39
CUX1P39880 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC29.98■■■□□ 2.39
CUX1P39880 FUT8-AS1-201ENST00000621019 1521 ntBASIC29.98■■■□□ 2.39
CUX1P39880 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CUX1P39880 GID4-202ENST00000376345 1391 ntTSL 3 BASIC29.98■■■□□ 2.39
CUX1P39880 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CUX1P39880 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC29.97■■■□□ 2.39
CUX1P39880 CALY-203ENST00000368558 825 ntTSL 5 BASIC29.97■■■□□ 2.39
CUX1P39880 PNMT-202ENST00000394246 821 ntTSL 2 BASIC29.97■■■□□ 2.39
CUX1P39880 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC29.97■■■□□ 2.39
CUX1P39880 AC103564.2-201ENST00000432853 1299 ntBASIC29.97■■■□□ 2.39
CUX1P39880 PRSS29P-201ENST00000440800 595 ntBASIC29.97■■■□□ 2.39
CUX1P39880 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC29.97■■■□□ 2.39
CUX1P39880 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC29.97■■■□□ 2.39
CUX1P39880 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC29.97■■■□□ 2.39
CUX1P39880 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC29.97■■■□□ 2.39
CUX1P39880 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
CUX1P39880 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
CUX1P39880 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
CUX1P39880 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
CUX1P39880 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 CD82-202ENST00000342935 967 ntTSL 5 BASIC29.96■■■□□ 2.39
CUX1P39880 COX5BP2-201ENST00000392354 334 ntBASIC29.96■■■□□ 2.39
CUX1P39880 OR7E47P-204ENST00000575924 449 ntBASIC29.96■■■□□ 2.39
CUX1P39880 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC29.96■■■□□ 2.39
CUX1P39880 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC29.96■■■□□ 2.39
CUX1P39880 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC29.96■■■□□ 2.39
CUX1P39880 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC29.96■■■□□ 2.39
CUX1P39880 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC29.96■■■□□ 2.39
CUX1P39880 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 SNHG9-202ENST00000564014 471 ntBASIC29.96■■■□□ 2.39
CUX1P39880 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC29.96■■■□□ 2.39
CUX1P39880 AC004790.2-201ENST00000623588 572 ntBASIC29.96■■■□□ 2.39
CUX1P39880 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
CUX1P39880 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
CUX1P39880 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
CUX1P39880 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC29.95■■■□□ 2.39
CUX1P39880 PHGDH-209ENST00000641074 1780 ntBASIC29.95■■■□□ 2.38
CUX1P39880 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
CUX1P39880 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
CUX1P39880 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC29.95■■■□□ 2.38
CUX1P39880 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC29.95■■■□□ 2.38
CUX1P39880 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC29.95■■■□□ 2.38
CUX1P39880 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC29.95■■■□□ 2.38
CUX1P39880 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC29.95■■■□□ 2.38
CUX1P39880 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC29.95■■■□□ 2.38
CUX1P39880 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CUX1P39880 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CUX1P39880 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CUX1P39880 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC29.94■■■□□ 2.38
CUX1P39880 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC29.94■■■□□ 2.38
CUX1P39880 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC29.94■■■□□ 2.38
CUX1P39880 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC29.94■■■□□ 2.38
CUX1P39880 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC29.94■■■□□ 2.38
CUX1P39880 AP002472.1-201ENST00000577490 586 ntBASIC29.94■■■□□ 2.38
CUX1P39880 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CUX1P39880 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC29.94■■■□□ 2.38
CUX1P39880 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC29.94■■■□□ 2.38
CUX1P39880 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC29.94■■■□□ 2.38
CUX1P39880 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC29.93■■■□□ 2.38
CUX1P39880 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
CUX1P39880 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms