Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHMT2P34897 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
SHMT2P34897 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
SHMT2P34897 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SHMT2P34897 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SHMT2P34897 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SHMT2P34897 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 IGHGP-201ENST00000390555 1178 ntBASIC17.66■□□□□ 0.42
SHMT2P34897 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.66■□□□□ 0.42
SHMT2P34897 AC113404.2-201ENST00000507884 177 ntBASIC17.66■□□□□ 0.42
SHMT2P34897 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.66■□□□□ 0.42
SHMT2P34897 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.66■□□□□ 0.42
SHMT2P34897 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.66■□□□□ 0.42
SHMT2P34897 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.66■□□□□ 0.42
SHMT2P34897 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.66■□□□□ 0.42
SHMT2P34897 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
SHMT2P34897 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHMT2P34897 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.66■□□□□ 0.42
SHMT2P34897 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SHMT2P34897 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.65■□□□□ 0.42
SHMT2P34897 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
SHMT2P34897 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SHMT2P34897 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SHMT2P34897 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.65■□□□□ 0.42
SHMT2P34897 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SHMT2P34897 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.65■□□□□ 0.42
SHMT2P34897 UPK3BP1-201ENST00000428678 509 ntBASIC17.65■□□□□ 0.42
SHMT2P34897 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.65■□□□□ 0.42
SHMT2P34897 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.65■□□□□ 0.42
SHMT2P34897 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.65■□□□□ 0.42
SHMT2P34897 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.65■□□□□ 0.42
SHMT2P34897 RNF126P1-202ENST00000569893 925 ntBASIC17.65■□□□□ 0.42
SHMT2P34897 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.65■□□□□ 0.42
SHMT2P34897 AC005332.3-201ENST00000589904 676 ntBASIC17.65■□□□□ 0.42
SHMT2P34897 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SHMT2P34897 AC069148.1-201ENST00000608741 768 ntBASIC17.65■□□□□ 0.42
SHMT2P34897 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.65■□□□□ 0.42
SHMT2P34897 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.65■□□□□ 0.42
SHMT2P34897 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 Z83836.1-201ENST00000624605 1642 ntBASIC17.65■□□□□ 0.42
SHMT2P34897 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHMT2P34897 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SHMT2P34897 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
SHMT2P34897 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SHMT2P34897 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
SHMT2P34897 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SHMT2P34897 TSPY22P-201ENST00000427496 604 ntBASIC17.64■□□□□ 0.41
SHMT2P34897 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.64■□□□□ 0.41
SHMT2P34897 BX276092.5-203ENST00000456199 560 ntBASIC17.64■□□□□ 0.41
SHMT2P34897 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.64■□□□□ 0.41
SHMT2P34897 KRT8P26-201ENST00000534154 1276 ntBASIC17.64■□□□□ 0.41
SHMT2P34897 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.64■□□□□ 0.41
SHMT2P34897 AL390719.2-201ENST00000606993 987 ntBASIC17.64■□□□□ 0.41
SHMT2P34897 AL121672.3-201ENST00000608644 468 ntBASIC17.64■□□□□ 0.41
SHMT2P34897 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SHMT2P34897 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SHMT2P34897 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SHMT2P34897 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.64■□□□□ 0.41
SHMT2P34897 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SHMT2P34897 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHMT2P34897 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms