Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL9A1P20849 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.48■□□□□ 0.55
COL9A1P20849 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL9A1P20849 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
COL9A1P20849 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.47■□□□□ 0.55
COL9A1P20849 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL9A1P20849 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
COL9A1P20849 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
COL9A1P20849 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL9A1P20849 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL9A1P20849 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL9A1P20849 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC18.47■□□□□ 0.55
COL9A1P20849 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.47■□□□□ 0.55
COL9A1P20849 NME2P1-201ENST00000426182 414 ntBASIC18.47■□□□□ 0.55
COL9A1P20849 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.47■□□□□ 0.55
COL9A1P20849 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.47■□□□□ 0.55
COL9A1P20849 AC108751.1-201ENST00000490852 363 ntBASIC18.47■□□□□ 0.55
COL9A1P20849 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.47■□□□□ 0.55
COL9A1P20849 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.47■□□□□ 0.55
COL9A1P20849 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.47■□□□□ 0.55
COL9A1P20849 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.47■□□□□ 0.55
COL9A1P20849 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.47■□□□□ 0.55
COL9A1P20849 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL9A1P20849 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL9A1P20849 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL9A1P20849 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.47■□□□□ 0.55
COL9A1P20849 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.47■□□□□ 0.55
COL9A1P20849 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.55
COL9A1P20849 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.46■□□□□ 0.55
COL9A1P20849 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
COL9A1P20849 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.46■□□□□ 0.55
COL9A1P20849 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 BASP1P1-201ENST00000430708 665 ntBASIC18.46■□□□□ 0.55
COL9A1P20849 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.46■□□□□ 0.55
COL9A1P20849 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC18.46■□□□□ 0.55
COL9A1P20849 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
COL9A1P20849 IGHV3-71-201ENST00000523324 359 ntBASIC18.46■□□□□ 0.55
COL9A1P20849 DUX4L27-201ENST00000554796 1261 ntBASIC18.46■□□□□ 0.55
COL9A1P20849 MTDHP4-201ENST00000600287 670 ntBASIC18.46■□□□□ 0.55
COL9A1P20849 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 AP000867.4-201ENST00000641616 219 ntBASIC18.46■□□□□ 0.55
COL9A1P20849 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.46■□□□□ 0.55
COL9A1P20849 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.46■□□□□ 0.55
COL9A1P20849 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL9A1P20849 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
COL9A1P20849 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
COL9A1P20849 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.45■□□□□ 0.54
COL9A1P20849 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.45■□□□□ 0.54
COL9A1P20849 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
COL9A1P20849 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
COL9A1P20849 LINC02560-201ENST00000596379 459 ntBASIC18.45■□□□□ 0.54
COL9A1P20849 AC008761.3-201ENST00000624803 892 ntBASIC18.45■□□□□ 0.54
COL9A1P20849 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL9A1P20849 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL9A1P20849 GPR89P-201ENST00000407924 1495 ntBASIC18.45■□□□□ 0.54
COL9A1P20849 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL9A1P20849 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL9A1P20849 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.44■□□□□ 0.54
COL9A1P20849 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
COL9A1P20849 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.44■□□□□ 0.54
COL9A1P20849 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 MIR149-201ENST00000384879 89 ntBASIC18.44■□□□□ 0.54
COL9A1P20849 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.44■□□□□ 0.54
COL9A1P20849 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL9A1P20849 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.44■□□□□ 0.54
COL9A1P20849 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.44■□□□□ 0.54
COL9A1P20849 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms